Skip to main content
crop-pal logo
Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • mitochondrion 2
  • cytosol 3
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra032135.1-P Field mustard cytosol 97.5 97.5
CDY39683 Canola cytosol 97.5 97.5
CDY65184 Canola cytosol 97.5 97.5
AT3G11500.2 Thale cress cytosol 96.25 97.47
VIT_08s0007g03130.t01 Wine grape cytosol 92.5 92.5
KRH67942 Soybean cytosol 91.25 92.41
KRG96200 Soybean nucleus 91.25 92.41
Zm00001d029483_P001 Maize cytosol 90.0 90.0
KRH28926 Soybean nucleus 88.75 89.87
EER94701 Sorghum cytosol 90.0 88.89
Zm00001d047271_P002 Maize cytosol 88.75 88.75
GSMUA_AchrUn_... Banana cytosol 87.5 88.61
Os03t0410900-01 Rice nucleus 87.5 87.5
Solyc11g006820.1.1 Tomato cytosol, nucleus 87.5 86.42
Os07t0608700-02 Rice cytosol 86.25 86.25
PGSC0003DMT400060122 Potato cytosol 86.25 86.25
Solyc05g055260.2.1 Tomato nucleus 86.25 86.25
GSMUA_Achr5P23160_001 Banana cytosol 85.0 86.08
GSMUA_Achr3P20170_001 Banana cytosol 85.0 86.08
PGSC0003DMT400061605 Potato cytosol 86.25 85.19
EER99690 Sorghum cytosol 85.0 85.0
TraesCS2A01G171800.1 Wheat cytosol 78.75 79.75
TraesCS2B01G198200.1 Wheat cytosol 78.75 77.78
HORVU2Hr1G031890.2 Barley cytosol 85.0 77.27
Zm00001d037942_P001 Maize cytosol, nucleus, plastid 52.5 36.52
Zm00001d052555_P001 Maize cytosol 52.5 36.52
AT2G03870.2 Thale cress cytosol 35.0 28.28
Zm00001d028673_P001 Maize extracellular 51.25 23.43
Protein Annotations
MapMan:16.4.2.7Gene3D:2.30.30.100EntrezGene:816925ProteinID:AAC63663.1ProteinID:AEC07503.1ProteinID:AEC07504.2
ArrayExpress:AT2G23930EnsemblPlantsGene:AT2G23930RefSeq:AT2G23930TAIR:AT2G23930RefSeq:AT2G23930-TAIR-GEnsemblPlants:AT2G23930.1
TAIR:AT2G23930.1EMBL:AY088256EMBL:BT002035EMBL:BT006498GO:GO:0000387GO:GO:0000398
GO:GO:0003674GO:GO:0003676GO:GO:0003723GO:GO:0003729GO:GO:0005488GO:GO:0005575
GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0005681GO:GO:0005682GO:GO:0005685
GO:GO:0005686GO:GO:0005687GO:GO:0005689GO:GO:0005737GO:GO:0005829GO:GO:0006139
GO:GO:0006397GO:GO:0008150GO:GO:0008152GO:GO:0008380GO:GO:0009987GO:GO:0016043
GO:GO:0019013GO:GO:0030529GO:GO:0034719GO:GO:0043186GO:GO:0071004GO:GO:0071011
GO:GO:0071013GO:GO:0097526InterPro:LSM_dom_euk/arcInterPro:LSM_dom_sfRefSeq:NP_001318277.1RefSeq:NP_179971.1
UniProt:O82221PFAM:PF01423PIRSF:PIRSF037188PO:PO:0000013PO:PO:0000037PO:PO:0000230
PO:PO:0000293PO:PO:0001054PO:PO:0001078PO:PO:0001081PO:PO:0001185PO:PO:0004507
PO:PO:0007064PO:PO:0007095PO:PO:0007098PO:PO:0007103PO:PO:0007115PO:PO:0007123
PO:PO:0007611PO:PO:0007616PO:PO:0008019PO:PO:0009005PO:PO:0009006PO:PO:0009009
PO:PO:0009010PO:PO:0009025PO:PO:0009029PO:PO:0009030PO:PO:0009031PO:PO:0009032
PO:PO:0009046PO:PO:0009047PO:PO:0009052PO:PO:0020030PO:PO:0020038PO:PO:0020100
PO:PO:0020137PO:PO:0025022PO:PO:0025281PANTHER:PTHR10553PANTHER:PTHR10553:SF15SMART:SM00651
Symbol:SNRNP-GSUPFAM:SSF50182InterPro:Sm_GUniParc:UPI0000001449::
Description
SNRNP-GProbable small nuclear ribonucleoprotein G [Source:UniProtKB/Swiss-Prot;Acc:O82221]
Coordinates
chr2:+:10182251..10183370
Molecular Weight (calculated)
8839.8 Da
IEP (calculated)
9.889
GRAVY (calculated)
-0.341
Length
80 amino acids
Sequence
(BLAST)
1: MSRSGQPPDL KKYMDKKLQI KLNANRMVTG TLRGFDQFMN LVVDNTVEVN GNDKTDIGMV VIRGNSIVTV EALEPVGRSS
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.