Factsheet for Os03t0410900-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
cytosol 3
mitochondrion 2
nucleus 2

Predictors

GFP

MS/MS

Papers

nucleus: 19621931

msms PMID: 19621931 doi

T Aki, S Yanagisawa

Department of Applied Biological Chemistry, The University of Tokyo, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER94701	Sorghum	cytosol	95.0	93.83
Zm00001d047271_P002	Maize	cytosol	93.75	93.75
Os07t0608700-02	Rice	cytosol	92.5	92.5
Zm00001d029483_P001	Maize	cytosol	92.5	92.5
GSMUA_AchrUn_...	Banana	cytosol	90.0	91.14
VIT_08s0007g03130.t01	Wine grape	cytosol	88.75	88.75
AT3G11500.2	Thale cress	cytosol	87.5	88.61
GSMUA_Achr5P23160_001	Banana	cytosol	87.5	88.61
GSMUA_Achr3P20170_001	Banana	cytosol	87.5	88.61
CDY23693	Canola	cytosol	87.5	88.61
CDY08518	Canola	cytosol	87.5	88.61
CDY01024	Canola	cytosol	87.5	88.61
Bra034834.1-P	Field mustard	cytosol	87.5	88.61
Bra034726.1-P	Field mustard	cytosol	87.5	88.61
Bra002044.1-P	Field mustard	cytosol	87.5	88.61
CDY39683	Canola	cytosol	87.5	87.5
CDY65184	Canola	cytosol	87.5	87.5
AT2G23930.1	Thale cress	cytosol	87.5	87.5
Bra032135.1-P	Field mustard	cytosol	87.5	87.5
KRG96200	Soybean	nucleus	86.25	87.34
KRH67942	Soybean	cytosol	86.25	87.34
KRH28926	Soybean	nucleus	86.25	87.34
PGSC0003DMT400060122	Potato	cytosol	86.25	86.25
Solyc05g055260.2.1	Tomato	nucleus	86.25	86.25
Solyc11g006820.1.1	Tomato	cytosol, nucleus	85.0	83.95
PGSC0003DMT400061605	Potato	cytosol	83.75	82.72
Zm00001d037942_P001	Maize	cytosol, nucleus, plastid	56.25	39.13
Zm00001d052555_P001	Maize	cytosol	56.25	39.13
Zm00001d028673_P001	Maize	extracellular	55.0	25.14
Os08t0177700-01	Rice	plasma membrane	33.75	25.0

Protein Annotations

MapMan:16.4.2.7	Gene3D:2.30.30.100	EntrezGene:4333092	ProteinID:AAR06315.1	ProteinID:ABF96561.1	EMBL:AK243125
ProteinID:BAF12259.1	ProteinID:BAS84660.1	ProteinID:EAZ27299.1	GO:GO:0000387	GO:GO:0000398	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005681	GO:GO:0005682	GO:GO:0005685	GO:GO:0005686	GO:GO:0005687
GO:GO:0005689	GO:GO:0005737	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016043	GO:GO:0034719	GO:GO:0043186	GO:GO:0071004	GO:GO:0071011	GO:GO:0071013
GO:GO:0097526	InterPro:LSM_dom_euk/arc	InterPro:LSM_dom_sf	EnsemblPlantsGene:Os03g0410900	EnsemblPlants:Os03t0410900-01	PFAM:PF01423
PIRSF:PIRSF037188	PANTHER:PTHR10553	PANTHER:PTHR10553:SF15	UniProt:Q75K32	SMART:SM00651	SUPFAM:SSF50182
InterPro:Sm_G	UniParc:UPI00001DF985	RefSeq:XP_015627963.1	:	:	:

Description

Like-Sm ribonucleoprotein, core family protein. (Os03t0410900-01)

Coordinates

chr3:+:16941149..16943327

Molecular Weight (calculated)

8888.9 Da

IEP (calculated)

9.840

GRAVY (calculated)

-0.260

Length

80 amino acids

Sequence
(BLAST)

1: MSRSGQPPDL KKYMDKKLQI KLNANRVIVG TLRGFDQFMN LVVDNTVEVN GNDKTDIGMV VVRGNSVVMI EALEPVPKSQ

Best Arabidopsis Sequence Match ( AT2G23930.1 )
(BLAST)

1: MSRSGQPPDL KKYMDKKLQI KLNANRMVTG TLRGFDQFMN LVVDNTVEVN GNDKTDIGMV VIRGNSIVTV EALEPVGRSS

Arabidopsis Description

SNRNP-GProbable small nuclear ribonucleoprotein G [Source:UniProtKB/Swiss-Prot;Acc:O82221]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.