Factsheet for PGSC0003DMT400061605

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 4
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g006820.1.1	Tomato	cytosol, nucleus	98.77	98.77
PGSC0003DMT400060122	Potato	cytosol	95.06	96.25
Zm00001d047271_P002	Maize	cytosol	87.65	88.75
EER99690	Sorghum	cytosol	87.65	88.75
GSMUA_AchrUn_...	Banana	cytosol	86.42	88.61
EER94701	Sorghum	cytosol	87.65	87.65
Zm00001d029483_P001	Maize	cytosol	86.42	87.5
Os07t0608700-02	Rice	cytosol	86.42	87.5
KRH67942	Soybean	cytosol	85.19	87.34
KRG96200	Soybean	nucleus	85.19	87.34
VIT_08s0007g03130.t01	Wine grape	cytosol	85.19	86.25
AT2G23930.1	Thale cress	cytosol	85.19	86.25
GSMUA_Achr5P23160_001	Banana	cytosol	83.95	86.08
GSMUA_Achr3P20170_001	Banana	cytosol	83.95	86.08
CDY23693	Canola	cytosol	82.72	84.81
KRH28926	Soybean	nucleus	82.72	84.81
CDY08518	Canola	cytosol	82.72	84.81
CDY01024	Canola	cytosol	82.72	84.81
Bra034834.1-P	Field mustard	cytosol	82.72	84.81
Bra034726.1-P	Field mustard	cytosol	82.72	84.81
Bra002044.1-P	Field mustard	cytosol	82.72	84.81
AT3G11500.2	Thale cress	cytosol	82.72	84.81
CDY65184	Canola	cytosol	82.72	83.75
CDY39683	Canola	cytosol	82.72	83.75
Os03t0410900-01	Rice	nucleus	82.72	83.75
Bra032135.1-P	Field mustard	cytosol	82.72	83.75
TraesCS2A01G171800.1	Wheat	cytosol	76.54	78.48
TraesCS2B01G198200.1	Wheat	cytosol	76.54	76.54
HORVU2Hr1G031890.2	Barley	cytosol	81.48	75.0
Zm00001d037942_P001	Maize	cytosol, nucleus, plastid	54.32	38.26
Zm00001d052555_P001	Maize	cytosol	54.32	38.26
PGSC0003DMT400006953	Potato	mitochondrion	34.57	28.28
Zm00001d028673_P001	Maize	extracellular	53.09	24.57

Protein Annotations

EntrezGene:102582252	MapMan:16.4.2.7	Gene3D:2.30.30.100	GO:GO:0000387	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005681	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016043	GO:GO:0030529	InterPro:LSM_dom_euk/arc	InterPro:LSM_dom_sf	UniProt:M1C7S5
PFAM:PF01423	EnsemblPlantsGene:PGSC0003DMG400023981	PGSC:PGSC0003DMG400023981	EnsemblPlants:PGSC0003DMT400061605	PIRSF:PIRSF037188	PANTHER:PTHR10553
PANTHER:PTHR10553:SF15	SMART:SM00651	SUPFAM:SSF50182	InterPro:Sm_G	UniParc:UPI0002963C0D	RefSeq:XP_006361485.1

Description

Small nuclear ribonucleoprotein polypeptide G [Source:PGSC_GENE;Acc:PGSC0003DMG400023981]

Coordinates

chr11:+:5472910..5477326

Molecular Weight (calculated)

9070.0 Da

IEP (calculated)

9.159

GRAVY (calculated)

-0.395

Length

81 amino acids

Sequence
(BLAST)

1: MSRSGQPPDL KKYMDKQLQI KLNANRLVTG TLRGFDQFMN LVIDNTVEIN GNDKNEIGMV VIRGNSVVTI EALEPVARPQ Q

Best Arabidopsis Sequence Match ( AT2G23930.1 )
(BLAST)

1: MSRSGQPPDL KKYMDKKLQI KLNANRMVTG TLRGFDQFMN LVVDNTVEVN GNDKTDIGMV VIRGNSIVTV EALEPVGRSS

Arabidopsis Description

SNRNP-GProbable small nuclear ribonucleoprotein G [Source:UniProtKB/Swiss-Prot;Acc:O82221]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.