Factsheet for GSMUA_Achr5P23160_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 3
mitochondrion 2
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
EpiLoc:	cytosol
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	cytosol	97.47	97.47
GSMUA_Achr3P20170_001	Banana	cytosol	94.94	94.94
KRH67942	Soybean	cytosol	92.41	92.41
KRG96200	Soybean	nucleus	92.41	92.41
Os07t0608700-02	Rice	cytosol	92.41	91.25
EER99690	Sorghum	cytosol	92.41	91.25
Zm00001d029483_P001	Maize	cytosol	91.14	90.0
EER94701	Sorghum	cytosol	91.14	88.89
VIT_08s0007g03130.t01	Wine grape	cytosol	89.87	88.75
Zm00001d047271_P002	Maize	cytosol	89.87	88.75
KRH28926	Soybean	nucleus	88.61	88.61
Solyc05g055260.2.1	Tomato	nucleus	88.61	87.5
PGSC0003DMT400060122	Potato	cytosol	88.61	87.5
Os03t0410900-01	Rice	nucleus	88.61	87.5
CDY23693	Canola	cytosol	86.08	86.08
CDY08518	Canola	cytosol	86.08	86.08
CDY01024	Canola	cytosol	86.08	86.08
Bra034834.1-P	Field mustard	cytosol	86.08	86.08
Bra034726.1-P	Field mustard	cytosol	86.08	86.08
Bra002044.1-P	Field mustard	cytosol	86.08	86.08
AT3G11500.2	Thale cress	cytosol	86.08	86.08
Solyc11g006820.1.1	Tomato	cytosol, nucleus	87.34	85.19
CDY39683	Canola	cytosol	86.08	85.0
Bra032135.1-P	Field mustard	cytosol	86.08	85.0
AT2G23930.1	Thale cress	cytosol	86.08	85.0
CDY65184	Canola	cytosol	86.08	85.0
PGSC0003DMT400061605	Potato	cytosol	86.08	83.95
TraesCS2A01G171800.1	Wheat	cytosol	82.28	82.28
TraesCS2B01G198200.1	Wheat	cytosol	82.28	80.25
HORVU2Hr1G031890.2	Barley	cytosol	88.61	79.55
Zm00001d037942_P001	Maize	cytosol, nucleus, plastid	53.16	36.52
Zm00001d052555_P001	Maize	cytosol	53.16	36.52
GSMUA_Achr10P...	Banana	cytosol	32.91	24.3
Zm00001d028673_P001	Maize	extracellular	51.9	23.43
GSMUA_Achr7P02070_001	Banana	extracellular	15.19	21.05

Protein Annotations

MapMan:16.4.2.7	Gene3D:2.30.30.100	GO:GO:0000387	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005681	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016043	GO:GO:0030529	EnsemblPlantsGene:GSMUA_Achr5G23160_001	EnsemblPlants:GSMUA_Achr5P23160_001	EnsemblPlants:GSMUA_Achr5T23160_001	InterPro:LSM_dom_euk/arc
InterPro:LSM_dom_sf	UniProt:M0T0Z1	PFAM:PF01423	PIRSF:PIRSF037188	PANTHER:PTHR10553	PANTHER:PTHR10553:SF15
SMART:SM00651	SUPFAM:SSF50182	InterPro:Sm_G	UniParc:UPI0002950231	:	:

Description

Probable small nuclear ribonucleoprotein G [Source:GMGC_GENE;Acc:GSMUA_Achr5G23160_001]

Coordinates

chr5:-:24975046..24977903

Molecular Weight (calculated)

8775.7 Da

IEP (calculated)

9.159

GRAVY (calculated)

-0.243

Length

79 amino acids

Sequence
(BLAST)

1: MSRSGQPPDL KKYMDKKLQI KLNANRVVVG TLRGFDQFMN LVVDNTVEVN GNEQNDIGMV VIRGNSVAMI EALEPVART

Best Arabidopsis Sequence Match ( AT2G23930.1 )
(BLAST)

1: MSRSGQPPDL KKYMDKKLQI KLNANRMVTG TLRGFDQFMN LVVDNTVEVN GNDKTDIGMV VIRGNSIVTV EALEPVGRSS

Arabidopsis Description

SNRNP-GProbable small nuclear ribonucleoprotein G [Source:UniProtKB/Swiss-Prot;Acc:O82221]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.