Factsheet for PGSC0003DMT400060122

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 3
mitochondrion 2
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
EpiLoc:	cytosol
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g055260.2.1	Tomato	nucleus	100.0	100.0
PGSC0003DMT400061605	Potato	cytosol	96.25	95.06
GSMUA_AchrUn_...	Banana	cytosol	90.0	91.14
Zm00001d047271_P002	Maize	cytosol	90.0	90.0
EER99690	Sorghum	cytosol	90.0	90.0
KRH67942	Soybean	cytosol	88.75	89.87
KRG96200	Soybean	nucleus	88.75	89.87
Zm00001d029483_P001	Maize	cytosol	88.75	88.75
VIT_08s0007g03130.t01	Wine grape	cytosol	88.75	88.75
Os07t0608700-02	Rice	cytosol	88.75	88.75
GSMUA_Achr5P23160_001	Banana	cytosol	87.5	88.61
GSMUA_Achr3P20170_001	Banana	cytosol	87.5	88.61
EER94701	Sorghum	cytosol	88.75	87.65
AT3G11500.2	Thale cress	cytosol	86.25	87.34
Bra002044.1-P	Field mustard	cytosol	86.25	87.34
Bra034726.1-P	Field mustard	cytosol	86.25	87.34
CDY23693	Canola	cytosol	86.25	87.34
KRH28926	Soybean	nucleus	86.25	87.34
CDY08518	Canola	cytosol	86.25	87.34
CDY01024	Canola	cytosol	86.25	87.34
Bra034834.1-P	Field mustard	cytosol	86.25	87.34
Os03t0410900-01	Rice	nucleus	86.25	86.25
Bra032135.1-P	Field mustard	cytosol	86.25	86.25
AT2G23930.1	Thale cress	cytosol	86.25	86.25
CDY39683	Canola	cytosol	86.25	86.25
CDY65184	Canola	cytosol	86.25	86.25
TraesCS2A01G171800.1	Wheat	cytosol	78.75	79.75
TraesCS2B01G198200.1	Wheat	cytosol	78.75	77.78
HORVU2Hr1G031890.2	Barley	cytosol	83.75	76.14
Zm00001d037942_P001	Maize	cytosol, nucleus, plastid	55.0	38.26
Zm00001d052555_P001	Maize	cytosol	55.0	38.26
PGSC0003DMT400006953	Potato	mitochondrion	37.5	30.3
Zm00001d028673_P001	Maize	extracellular	53.75	24.57

Protein Annotations

EntrezGene:102582177	MapMan:16.4.2.7	Gene3D:2.30.30.100	GO:GO:0000387	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005681	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016043	GO:GO:0030529	InterPro:LSM_dom_euk/arc	InterPro:LSM_dom_sf	UniProt:M1C5A0
PFAM:PF01423	EnsemblPlantsGene:PGSC0003DMG400023392	PGSC:PGSC0003DMG400023392	EnsemblPlants:PGSC0003DMT400060122	PIRSF:PIRSF037188	PANTHER:PTHR10553
PANTHER:PTHR10553:SF15	SMART:SM00651	SUPFAM:SSF50182	InterPro:Sm_G	UniParc:UPI000276707F	RefSeq:XP_006345869.1

Description

Small nuclear ribonucleoprotein E [Source:PGSC_GENE;Acc:PGSC0003DMG400023392]

Coordinates

chr5:-:50945739..50948895

Molecular Weight (calculated)

8940.9 Da

IEP (calculated)

9.159

GRAVY (calculated)

-0.390

Length

80 amino acids

Sequence
(BLAST)

1: MSRSGQPPDL KKYMDKQLQI KLNANRQVVG TLRGFDQFMN LVIDNTVEVN GNDKNEIGMV VIRGNSVVTI EALEPVARPQ

Best Arabidopsis Sequence Match ( AT2G23930.1 )
(BLAST)

1: MSRSGQPPDL KKYMDKKLQI KLNANRMVTG TLRGFDQFMN LVVDNTVEVN GNDKTDIGMV VIRGNSIVTV EALEPVGRSS

Arabidopsis Description

SNRNP-GProbable small nuclear ribonucleoprotein G [Source:UniProtKB/Swiss-Prot;Acc:O82221]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.