CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 3
mitochondrion 2
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
EpiLoc:	cytosol
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH67942	Soybean	cytosol	96.2	96.2
KRG96200	Soybean	nucleus	96.2	96.2
VIT_08s0007g03130.t01	Wine grape	cytosol	93.67	92.5
GSMUA_AchrUn_...	Banana	cytosol	91.14	91.14
GSMUA_Achr3P20170_001	Banana	cytosol	91.14	91.14
AT3G11500.2	Thale cress	cytosol	89.87	89.87
CDY23693	Canola	cytosol	89.87	89.87
CDY08518	Canola	cytosol	89.87	89.87
CDY01024	Canola	cytosol	89.87	89.87
Bra034834.1-P	Field mustard	cytosol	89.87	89.87
CDY39683	Canola	cytosol	89.87	88.75
CDY65184	Canola	cytosol	89.87	88.75
Bra032135.1-P	Field mustard	cytosol	89.87	88.75
AT2G23930.1	Thale cress	cytosol	89.87	88.75
Bra034726.1-P	Field mustard	cytosol	88.61	88.61
GSMUA_Achr5P23160_001	Banana	cytosol	88.61	88.61
Bra002044.1-P	Field mustard	cytosol	88.61	88.61
EER99690	Sorghum	cytosol	88.61	87.5
Os07t0608700-02	Rice	cytosol	88.61	87.5
Solyc05g055260.2.1	Tomato	nucleus	87.34	86.25
PGSC0003DMT400060122	Potato	cytosol	87.34	86.25
Os03t0410900-01	Rice	nucleus	87.34	86.25
Zm00001d029483_P001	Maize	cytosol	86.08	85.0
Solyc11g006820.1.1	Tomato	cytosol, nucleus	86.08	83.95
EER94701	Sorghum	cytosol	86.08	83.95
Zm00001d047271_P002	Maize	cytosol	84.81	83.75
PGSC0003DMT400061605	Potato	cytosol	84.81	82.72
TraesCS2A01G171800.1	Wheat	cytosol	77.22	77.22
TraesCS2B01G198200.1	Wheat	cytosol	77.22	75.31
HORVU2Hr1G031890.2	Barley	cytosol	83.54	75.0
Zm00001d037942_P001	Maize	cytosol, nucleus, plastid	49.37	33.91
Zm00001d052555_P001	Maize	cytosol	49.37	33.91
KRH27506	Soybean	cytosol	36.71	29.9
KRH58808	Soybean	cytosol, extracellular, nucleus	36.71	29.29
KRH42700	Soybean	cytosol, extracellular, nucleus	36.71	29.29
Zm00001d028673_P001	Maize	extracellular	48.1	21.71

Protein Annotations

EntrezGene:100500333	MapMan:16.4.2.7	Gene3D:2.30.30.100	EMBL:ACUP02006771	EMBL:BT091252	UniProt:C6T1E6
EnsemblPlantsGene:GLYMA_11G086200	GO:GO:0000387	GO:GO:0000398	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005681
GO:GO:0005682	GO:GO:0005685	GO:GO:0005686	GO:GO:0005687	GO:GO:0005689	GO:GO:0005737
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0030529
GO:GO:0034719	GO:GO:0043186	GO:GO:0071004	GO:GO:0071011	GO:GO:0071013	GO:GO:0097526
EnsemblPlants:KRH28926	ProteinID:KRH28926	ProteinID:KRH28926.1	InterPro:LSM_dom_euk/arc	InterPro:LSM_dom_sf	PFAM:PF01423
PIRSF:PIRSF037188	PANTHER:PTHR10553	PANTHER:PTHR10553:SF15	SMART:SM00651	SUPFAM:SSF50182	InterPro:Sm_G
UniParc:UPI00019AA9F7	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr11:+:6484759..6486170

Molecular Weight (calculated)

8804.8 Da

IEP (calculated)

9.889

GRAVY (calculated)

-0.343

Length

79 amino acids

Sequence
(BLAST)

1: MSRSGQPPDL KKYMDKKLQI KLNGNRMIVG TLRGFDQFMN LVVDNTVEVN GNEKNDIGMV VIRGNSVVTV EALEPVNRA

Best Arabidopsis Sequence Match ( AT2G23930.1 )
(BLAST)

1: MSRSGQPPDL KKYMDKKLQI KLNANRMVTG TLRGFDQFMN LVVDNTVEVN GNDKTDIGMV VIRGNSIVTV EALEPVGRSS

Arabidopsis Description

SNRNP-GProbable small nuclear ribonucleoprotein G [Source:UniProtKB/Swiss-Prot;Acc:O82221]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.