Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 6
- endoplasmic reticulum 4
- vacuole 4
- plasma membrane 5
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d052555_P001 | Maize | cytosol | 45.71 | 69.57 |
| Zm00001d037942_P001 | Maize | cytosol, nucleus, plastid | 45.14 | 68.7 |
| Zm00001d047271_P002 | Maize | cytosol | 27.43 | 60.0 |
| EER94701 | Sorghum | cytosol | 26.86 | 58.02 |
| Zm00001d029483_P001 | Maize | cytosol | 25.71 | 56.25 |
| Os03t0410900-01 | Rice | nucleus | 25.14 | 55.0 |
| Solyc11g006820.1.1 | Tomato | cytosol, nucleus | 25.14 | 54.32 |
| VIT_08s0007g03130.t01 | Wine grape | cytosol | 24.57 | 53.75 |
| Solyc05g055260.2.1 | Tomato | nucleus | 24.57 | 53.75 |
| PGSC0003DMT400060122 | Potato | cytosol | 24.57 | 53.75 |
| GSMUA_AchrUn_... | Banana | cytosol | 24.0 | 53.16 |
| PGSC0003DMT400061605 | Potato | cytosol | 24.57 | 53.09 |
| GSMUA_Achr5P23160_001 | Banana | cytosol | 23.43 | 51.9 |
| AT2G23930.1 | Thale cress | cytosol | 23.43 | 51.25 |
| KRG96200 | Soybean | nucleus | 22.86 | 50.63 |
| KRH67942 | Soybean | cytosol | 22.86 | 50.63 |
| GSMUA_Achr3P20170_001 | Banana | cytosol | 22.86 | 50.63 |
| CDY23693 | Canola | cytosol | 22.86 | 50.63 |
| CDY08518 | Canola | cytosol | 22.86 | 50.63 |
| CDY01024 | Canola | cytosol | 22.86 | 50.63 |
| Bra034834.1-P | Field mustard | cytosol | 22.86 | 50.63 |
| Bra034726.1-P | Field mustard | cytosol | 22.86 | 50.63 |
| Bra002044.1-P | Field mustard | cytosol | 22.86 | 50.63 |
| AT3G11500.2 | Thale cress | cytosol | 22.86 | 50.63 |
| CDY65184 | Canola | cytosol | 22.86 | 50.0 |
| CDY39683 | Canola | cytosol | 22.86 | 50.0 |
| Bra032135.1-P | Field mustard | cytosol | 22.86 | 50.0 |
| KRH28926 | Soybean | nucleus | 21.71 | 48.1 |
| Zm00001d002155_P001 | Maize | cytosol | 12.57 | 22.45 |
| Zm00001d026392_P002 | Maize | mitochondrion | 12.57 | 14.97 |
Protein Annotations
| EnsemblPlants:Zm00001d028673_P001 | EnsemblPlants:Zm00001d028673_T001 | EnsemblPlantsGene:Zm00001d028673 | Gene3D:2.30.30.100 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0019013 | GO:GO:0030529 | InterPro:LSM_dom_euk/arc | InterPro:LSM_dom_sf | PANTHER:PTHR10553 |
| PANTHER:PTHR10553:SF15 | PFAM:PF01423 | ProteinID:ONL96718.1 | SignalP:SignalP-noTM | SMART:SM00651 | SUPFAM:SSF50182 |
| UniParc:UPI0008439165 | UniProt:A0A1D6JYJ3 | MapMan:16.4.2.7 | : | : | : |
Description
Probable small nuclear ribonucleoprotein G
Coordinates
chr1:-:42582321..42583087
Molecular Weight (calculated)
19527.0 Da
IEP (calculated)
8.618
GRAVY (calculated)
0.535
Length
175 amino acids
Sequence
(BLAST)
(BLAST)
001: MSFCFVILFL LYLGGAKLDQ FFAIEFMSGL YVQSLHISSV KLNANRLVIG TLRGFDQFMN LVINNTVDVS GNYNTHNGMV FIRGNRVVMI EALELISKSQ
101: HNCGGQSYLF PAFPSSYVVL VAMQTSTQVG LANSASPRFN DGFIYCLLSA NIDNKSFLLL FYIVVALRPC LVRHM
101: HNCGGQSYLF PAFPSSYVVL VAMQTSTQVG LANSASPRFN DGFIYCLLSA NIDNKSFLLL FYIVVALRPC LVRHM
1: MSRSGQPPDL KKYMDKKLQI KLNANRMVTG TLRGFDQFMN LVVDNTVEVN GNDKTDIGMV VIRGNSIVTV EALEPVGRSS
Arabidopsis Description
SNRNP-GProbable small nuclear ribonucleoprotein G [Source:UniProtKB/Swiss-Prot;Acc:O82221]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.