CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 3
mitochondrion 2
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d047271_P002	Maize	cytosol	97.53	98.75
Zm00001d029483_P001	Maize	cytosol	96.3	97.5
Os03t0410900-01	Rice	nucleus	93.83	95.0
EER99690	Sorghum	cytosol	93.83	95.0
GSMUA_AchrUn_...	Banana	cytosol	91.36	93.67
GSMUA_Achr5P23160_001	Banana	cytosol	88.89	91.14
GSMUA_Achr3P20170_001	Banana	cytosol	88.89	91.14
AT2G23930.1	Thale cress	cytosol	88.89	90.0
VIT_08s0007g03130.t01	Wine grape	cytosol	88.89	90.0
AT3G11500.2	Thale cress	cytosol	87.65	89.87
Bra002044.1-P	Field mustard	cytosol	87.65	89.87
CDY23693	Canola	cytosol	87.65	89.87
CDY08518	Canola	cytosol	87.65	89.87
CDY01024	Canola	cytosol	87.65	89.87
Bra034726.1-P	Field mustard	cytosol	87.65	89.87
Bra034834.1-P	Field mustard	cytosol	87.65	89.87
Solyc11g006820.1.1	Tomato	cytosol, nucleus	88.89	88.89
CDY39683	Canola	cytosol	87.65	88.75
Bra032135.1-P	Field mustard	cytosol	87.65	88.75
Solyc05g055260.2.1	Tomato	nucleus	87.65	88.75
PGSC0003DMT400060122	Potato	cytosol	87.65	88.75
CDY65184	Canola	cytosol	87.65	88.75
KRH67942	Soybean	cytosol	86.42	88.61
KRG96200	Soybean	nucleus	86.42	88.61
PGSC0003DMT400061605	Potato	cytosol	87.65	87.65
KRH28926	Soybean	nucleus	83.95	86.08
Zm00001d037942_P001	Maize	cytosol, nucleus, plastid	59.26	41.74
Zm00001d052555_P001	Maize	cytosol	59.26	41.74
EES12932	Sorghum	cytosol	34.57	28.57
Zm00001d028673_P001	Maize	extracellular	58.02	26.86

Protein Annotations

MapMan:16.4.2.7	Gene3D:2.30.30.100	EntrezGene:8080416	UniProt:C5WWN1	EnsemblPlants:EER94701	ProteinID:EER94701
ProteinID:EER94701.1	GO:GO:0000387	GO:GO:0000398	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005681
GO:GO:0005682	GO:GO:0005685	GO:GO:0005686	GO:GO:0005687	GO:GO:0005689	GO:GO:0005737
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0030529
GO:GO:0034719	GO:GO:0043186	GO:GO:0071004	GO:GO:0071011	GO:GO:0071013	GO:GO:0097526
InterPro:LSM_dom_euk/arc	InterPro:LSM_dom_sf	PFAM:PF01423	PIRSF:PIRSF037188	PANTHER:PTHR10553	PANTHER:PTHR10553:SF15
SMART:SM00651	EnsemblPlantsGene:SORBI_3001G340500	SUPFAM:SSF50182	unigene:Sbi.12254	InterPro:Sm_G	UniParc:UPI00016EE6A8
RefSeq:XP_002467703.1	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:62795260..62797726

Molecular Weight (calculated)

9005.0 Da

IEP (calculated)

9.840

GRAVY (calculated)

-0.254

Length

81 amino acids

Sequence
(BLAST)

1: MSRSGQPPDL KKYMDKKLQI KLNANRVVIG TLRGFDQFMN LVVDNTVEVN GNDKTDIGMV VIRGNSVVMI EALEPVAKSQ Q

Best Arabidopsis Sequence Match ( AT2G23930.1 )
(BLAST)

1: MSRSGQPPDL KKYMDKKLQI KLNANRMVTG TLRGFDQFMN LVVDNTVEVN GNDKTDIGMV VIRGNSIVTV EALEPVGRSS

Arabidopsis Description

SNRNP-GProbable small nuclear ribonucleoprotein G [Source:UniProtKB/Swiss-Prot;Acc:O82221]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.