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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 1
  • golgi 1
  • cytosol 3
  • mitochondrion 2
  • nucleus 2
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra032135.1-P Field mustard cytosol 100.0 100.0
CDY01024 Canola cytosol 98.75 100.0
CDY08518 Canola cytosol 98.75 100.0
CDY23693 Canola cytosol 98.75 100.0
CDY39683 Canola cytosol 100.0 100.0
AT2G23930.1 Thale cress cytosol 97.5 97.5
VIT_08s0007g03130.t01 Wine grape cytosol 92.5 92.5
KRG96200 Soybean nucleus 91.25 92.41
KRH67942 Soybean cytosol 91.25 92.41
KRH28926 Soybean nucleus 88.75 89.87
Zm00001d029483_P001 Maize cytosol 88.75 88.75
GSMUA_AchrUn_... Banana cytosol 87.5 88.61
EER94701 Sorghum cytosol 88.75 87.65
Zm00001d047271_P002 Maize cytosol 87.5 87.5
Os03t0410900-01 Rice nucleus 87.5 87.5
PGSC0003DMT400060122 Potato cytosol 86.25 86.25
Solyc05g055260.2.1 Tomato nucleus 86.25 86.25
GSMUA_Achr5P23160_001 Banana cytosol 85.0 86.08
GSMUA_Achr3P20170_001 Banana cytosol 85.0 86.08
Os07t0608700-02 Rice cytosol 85.0 85.0
Solyc11g006820.1.1 Tomato cytosol, nucleus 85.0 83.95
EER99690 Sorghum cytosol 83.75 83.75
PGSC0003DMT400061605 Potato cytosol 83.75 82.72
TraesCS2A01G171800.1 Wheat cytosol 80.0 81.01
TraesCS2B01G198200.1 Wheat cytosol 80.0 79.01
HORVU2Hr1G031890.2 Barley cytosol 86.25 78.41
Zm00001d037942_P001 Maize cytosol, nucleus, plastid 51.25 35.65
Zm00001d052555_P001 Maize cytosol 51.25 35.65
CDY45725 Canola cytosol 35.0 23.33
Zm00001d028673_P001 Maize extracellular 50.0 22.86
CDY49697 Canola mitochondrion 35.0 17.18
CDX83524 Canola golgi 33.75 10.55
CDY48065 Canola golgi 33.75 8.06
Protein Annotations
MapMan:16.4.2.7Gene3D:2.30.30.100GO:A0A078JES5UniProt:A0A078JES5ProteinID:CDY39683.1EnsemblPlants:CDY65184
ProteinID:CDY65184ProteinID:CDY65184.1GO:GO:0000387GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005634GO:GO:0005681GO:GO:0006139GO:GO:0008150GO:GO:0008152GO:GO:0009987
GO:GO:0016043GO:GO:0030529EnsemblPlantsGene:GSBRNA2T00045342001InterPro:LSM_dom_euk/arcInterPro:LSM_dom_sfPFAM:PF01423
PIRSF:PIRSF037188PANTHER:PTHR10553PANTHER:PTHR10553:SF15SMART:SM00651SUPFAM:SSF50182InterPro:Sm_G
UniParc:UPI00019AAA0E:::::
Description
BnaC04g56220DBnaA04g14000D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JES5]
Coordinates
chrLK034682:-:12441..13325
Molecular Weight (calculated)
8838.8 Da
IEP (calculated)
9.134
GRAVY (calculated)
-0.280
Length
80 amino acids
Sequence
(BLAST)
1: MSRSGQPPDL KKYMDKKLQI KLNANRMVVG TLRGFDQFMN LVVDNTVEVN GDDKTDIGMV VIRGNSIVTV EALEPVGRSS
Best Arabidopsis Sequence Match ( AT3G11500.1 )
(BLAST)
1: MSRSGQPPDL KKYMDKKLQI KLNANRMVVG TLRGFDQFMN LVVDNTVEVN GDDKTDIGMV VIRGNSIVTV EALEPVGRS
Arabidopsis Description
Putative small nuclear ribonucleoprotein polypeptide G [Source:UniProtKB/TrEMBL;Acc:Q9CAX7]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.