Skip to main content
crop-pal logo
Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: golgi

Predictor Summary:
  • extracellular 5
  • endoplasmic reticulum 5
  • vacuole 5
  • plasma membrane 5
  • golgi 7
  • plastid 2
Predictors GFP MS/MS Papers
Winner Takes All:golgi
Any Predictor:plastid, secretory
BaCelLo:secretory
ChloroP:plastid
iPSORT:secretory
MultiLoc:golgi
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:plastid
YLoc:golgi
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX80625 cytosol, nucleus
CDX86143 cytosol, nucleus
CDY19734 cytosol, nucleus
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX83524 Canola golgi 74.93 98.05
Bra025138.1-P Field mustard golgi 69.85 94.74
AT2G03870.2 Thale cress cytosol 26.87 90.91
KRH42700 Soybean cytosol, extracellular, nucleus 25.67 86.87
KRH58808 Soybean cytosol, extracellular, nucleus 25.67 86.87
KRH27506 Soybean cytosol 24.48 84.54
Solyc09g009640.2.1 Tomato extracellular, nucleus 24.48 82.83
PGSC0003DMT400006953 Potato mitochondrion 24.48 82.83
VIT_13s0064g01230.t01 Wine grape cytosol 25.97 81.31
Zm00001d002155_P001 Maize cytosol 23.28 79.59
EES12932 Sorghum cytosol 23.28 79.59
TraesCS2D01G531700.1 Wheat cytosol, nucleus, plastid 23.58 79.0
TraesCS2B01G559200.1 Wheat cytosol, nucleus, plastid 23.58 79.0
TraesCS2A01G528800.1 Wheat cytosol, nucleus, plastid 23.58 79.0
GSMUA_Achr10P... Banana cytosol 25.07 78.5
CDY45725 Canola cytosol 28.06 78.33
TraesCS7A01G368900.1 Wheat cytosol 22.69 73.08
Os08t0177700-01 Rice plasma membrane 23.28 72.22
GSMUA_Achr7P02070_001 Banana extracellular 11.94 70.18
TraesCS7B01G259600.1 Wheat cytosol 20.0 64.42
CDY49697 Canola mitochondrion 27.76 57.06
TraesCSU01G104500.2 Wheat plastid 23.28 53.06
TraesCS1D01G062600.1 Wheat cytosol, nucleus, plastid 15.22 52.58
Zm00001d026392_P002 Maize mitochondrion 22.39 51.02
CDY01024 Canola cytosol 8.06 34.18
CDY08518 Canola cytosol 8.06 34.18
CDY23693 Canola cytosol 8.06 34.18
CDY65184 Canola cytosol 8.06 33.75
CDY39683 Canola cytosol 8.06 33.75
Protein Annotations
MapMan:16.4.3.7Gene3D:2.30.30.100UniProt:A0A078IB21EnsemblPlants:CDY48065ProteinID:CDY48065ProteinID:CDY48065.1
GO:GO:0000398GO:GO:0000956GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0006139
GO:GO:0008150GO:GO:0008152GO:GO:0009056GO:GO:0009987GO:GO:0030529EnsemblPlantsGene:GSBRNA2T00088736001
InterPro:LSM_dom_euk/arcInterPro:LSM_dom_sfInterPro:Lsm7PFAM:PF01423PANTHER:PTHR10553PANTHER:PTHR10553:SF5
SMART:SM00651SUPFAM:SSF50182SignalP:SignalP-noTMTMHMM:TMhelixUniParc:UPI0004EDB635SEG:seg
Description
BnaA06g33630DBnaA06g33630D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IB21]
Coordinates
chrLK032752:+:21479..25359
Molecular Weight (calculated)
37387.1 Da
IEP (calculated)
7.794
GRAVY (calculated)
-0.186
Length
335 amino acids
Sequence
(BLAST)
001: MKLIRVTFLF CALAFLFLIT PTCSLQLHAR FSSPSQGVSE KIVIGMAPPR KLMIISSEHE NVMKSGAQES SSEQPRVTSS SGKSKNEEKR LGEEEEEKAL
101: SKYLSMDYPR IKQNPKSLVW GLSLPALRFT HCNMMAGLVE DYSGWVRRLV FKEDECRWYP TRGCHVKDNV SNKLFSNQNI LGSEYCMNVN SYAAGLLQIT
201: TFIFSDFTIN IIVPSPPKFS SEIFVSPVTS VEHALLYHGR KETVLDLAKF VDKGVQVKLT GGRQVTGTLK GYDQLLNLVL DGALESVRDH DDPLKTTDQT
301: RRLGLIVCRG TAVMLVSPTD GTEEIANPFN QPEAL
Best Arabidopsis Sequence Match ( AT2G03870.1 )
(BLAST)
1: MSGRKETVLD LAKFVDKGVQ VKLTGGRQVT GTLKGYDQLL NLVLDEAVEF VRDHDDPLKT TDQTRRLGLI VCRGTAVMLV SPTDGTEEIA NPFVTAEAV
Arabidopsis Description
LSM7LSM7 [Source:UniProtKB/TrEMBL;Acc:A0A178VPR3]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.