Subcellular Localization
min:
: max
Winner_takes_all: golgi
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 5
- vacuole 5
- plasma membrane 5
- golgi 7
- plastid 2
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
CDX83524 | Canola | golgi | 74.93 | 98.05 |
Bra025138.1-P | Field mustard | golgi | 69.85 | 94.74 |
AT2G03870.2 | Thale cress | cytosol | 26.87 | 90.91 |
KRH42700 | Soybean | cytosol, extracellular, nucleus | 25.67 | 86.87 |
KRH58808 | Soybean | cytosol, extracellular, nucleus | 25.67 | 86.87 |
KRH27506 | Soybean | cytosol | 24.48 | 84.54 |
Solyc09g009640.2.1 | Tomato | extracellular, nucleus | 24.48 | 82.83 |
PGSC0003DMT400006953 | Potato | mitochondrion | 24.48 | 82.83 |
VIT_13s0064g01230.t01 | Wine grape | cytosol | 25.97 | 81.31 |
Zm00001d002155_P001 | Maize | cytosol | 23.28 | 79.59 |
EES12932 | Sorghum | cytosol | 23.28 | 79.59 |
TraesCS2D01G531700.1 | Wheat | cytosol, nucleus, plastid | 23.58 | 79.0 |
TraesCS2B01G559200.1 | Wheat | cytosol, nucleus, plastid | 23.58 | 79.0 |
TraesCS2A01G528800.1 | Wheat | cytosol, nucleus, plastid | 23.58 | 79.0 |
GSMUA_Achr10P... | Banana | cytosol | 25.07 | 78.5 |
CDY45725 | Canola | cytosol | 28.06 | 78.33 |
TraesCS7A01G368900.1 | Wheat | cytosol | 22.69 | 73.08 |
Os08t0177700-01 | Rice | plasma membrane | 23.28 | 72.22 |
GSMUA_Achr7P02070_001 | Banana | extracellular | 11.94 | 70.18 |
TraesCS7B01G259600.1 | Wheat | cytosol | 20.0 | 64.42 |
CDY49697 | Canola | mitochondrion | 27.76 | 57.06 |
TraesCSU01G104500.2 | Wheat | plastid | 23.28 | 53.06 |
TraesCS1D01G062600.1 | Wheat | cytosol, nucleus, plastid | 15.22 | 52.58 |
Zm00001d026392_P002 | Maize | mitochondrion | 22.39 | 51.02 |
CDY01024 | Canola | cytosol | 8.06 | 34.18 |
CDY08518 | Canola | cytosol | 8.06 | 34.18 |
CDY23693 | Canola | cytosol | 8.06 | 34.18 |
CDY65184 | Canola | cytosol | 8.06 | 33.75 |
CDY39683 | Canola | cytosol | 8.06 | 33.75 |
Protein Annotations
MapMan:16.4.3.7 | Gene3D:2.30.30.100 | UniProt:A0A078IB21 | EnsemblPlants:CDY48065 | ProteinID:CDY48065 | ProteinID:CDY48065.1 |
GO:GO:0000398 | GO:GO:0000956 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0006139 |
GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0030529 | EnsemblPlantsGene:GSBRNA2T00088736001 |
InterPro:LSM_dom_euk/arc | InterPro:LSM_dom_sf | InterPro:Lsm7 | PFAM:PF01423 | PANTHER:PTHR10553 | PANTHER:PTHR10553:SF5 |
SMART:SM00651 | SUPFAM:SSF50182 | SignalP:SignalP-noTM | TMHMM:TMhelix | UniParc:UPI0004EDB635 | SEG:seg |
Description
BnaA06g33630DBnaA06g33630D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IB21]
Coordinates
chrLK032752:+:21479..25359
Molecular Weight (calculated)
37387.1 Da
IEP (calculated)
7.794
GRAVY (calculated)
-0.186
Length
335 amino acids
Sequence
(BLAST)
(BLAST)
001: MKLIRVTFLF CALAFLFLIT PTCSLQLHAR FSSPSQGVSE KIVIGMAPPR KLMIISSEHE NVMKSGAQES SSEQPRVTSS SGKSKNEEKR LGEEEEEKAL
101: SKYLSMDYPR IKQNPKSLVW GLSLPALRFT HCNMMAGLVE DYSGWVRRLV FKEDECRWYP TRGCHVKDNV SNKLFSNQNI LGSEYCMNVN SYAAGLLQIT
201: TFIFSDFTIN IIVPSPPKFS SEIFVSPVTS VEHALLYHGR KETVLDLAKF VDKGVQVKLT GGRQVTGTLK GYDQLLNLVL DGALESVRDH DDPLKTTDQT
301: RRLGLIVCRG TAVMLVSPTD GTEEIANPFN QPEAL
101: SKYLSMDYPR IKQNPKSLVW GLSLPALRFT HCNMMAGLVE DYSGWVRRLV FKEDECRWYP TRGCHVKDNV SNKLFSNQNI LGSEYCMNVN SYAAGLLQIT
201: TFIFSDFTIN IIVPSPPKFS SEIFVSPVTS VEHALLYHGR KETVLDLAKF VDKGVQVKLT GGRQVTGTLK GYDQLLNLVL DGALESVRDH DDPLKTTDQT
301: RRLGLIVCRG TAVMLVSPTD GTEEIANPFN QPEAL
1: MSGRKETVLD LAKFVDKGVQ VKLTGGRQVT GTLKGYDQLL NLVLDEAVEF VRDHDDPLKT TDQTRRLGLI VCRGTAVMLV SPTDGTEEIA NPFVTAEAV
Arabidopsis Description
LSM7LSM7 [Source:UniProtKB/TrEMBL;Acc:A0A178VPR3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.