Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 4
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr1P13020_001 | cytosol, nucleus |
| GSMUA_Achr2P06970_001 | cytosol, nucleus |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH58808 | Soybean | cytosol, extracellular, nucleus | 85.05 | 91.92 |
| KRH42700 | Soybean | cytosol, extracellular, nucleus | 85.05 | 91.92 |
| KRH27506 | Soybean | cytosol | 82.24 | 90.72 |
| Solyc09g009640.2.1 | Tomato | extracellular, nucleus | 81.31 | 87.88 |
| PGSC0003DMT400006953 | Potato | mitochondrion | 81.31 | 87.88 |
| VIT_13s0064g01230.t01 | Wine grape | cytosol | 85.98 | 85.98 |
| AT2G03870.2 | Thale cress | cytosol | 79.44 | 85.86 |
| EES12932 | Sorghum | cytosol | 73.83 | 80.61 |
| Zm00001d002155_P001 | Maize | cytosol | 72.9 | 79.59 |
| TraesCS2B01G559200.1 | Wheat | cytosol, nucleus, plastid | 72.9 | 78.0 |
| TraesCS2A01G528800.1 | Wheat | cytosol, nucleus, plastid | 72.9 | 78.0 |
| TraesCS2D01G531700.1 | Wheat | cytosol, nucleus, plastid | 72.9 | 78.0 |
| Os08t0177700-01 | Rice | plasma membrane | 78.5 | 77.78 |
| GSMUA_Achr7P02070_001 | Banana | extracellular | 41.12 | 77.19 |
| TraesCS7A01G368900.1 | Wheat | cytosol | 71.96 | 74.04 |
| CDY45725 | Canola | cytosol | 80.37 | 71.67 |
| TraesCS7B01G259600.1 | Wheat | cytosol | 63.55 | 65.38 |
| TraesCSU01G104500.2 | Wheat | plastid | 72.9 | 53.06 |
| CDY49697 | Canola | mitochondrion | 79.44 | 52.15 |
| Zm00001d026392_P002 | Maize | mitochondrion | 69.16 | 50.34 |
| TraesCS1D01G062600.1 | Wheat | cytosol, nucleus, plastid | 44.86 | 49.48 |
| GSMUA_Achr3P20170_001 | Banana | cytosol | 25.23 | 34.18 |
| Bra025138.1-P | Field mustard | golgi | 78.5 | 34.01 |
| GSMUA_AchrUn_... | Banana | cytosol | 24.3 | 32.91 |
| GSMUA_Achr5P23160_001 | Banana | cytosol | 24.3 | 32.91 |
| CDX83524 | Canola | golgi | 78.5 | 32.81 |
| CDY48065 | Canola | golgi | 78.5 | 25.07 |
Protein Annotations
| MapMan:16.4.3.7 | Gene3D:2.30.30.100 | GO:GO:0000398 | GO:GO:0000956 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 |
| GO:GO:0030529 | EnsemblPlantsGene:GSMUA_Achr10G03370_001 | EnsemblPlants:GSMUA_Achr10P03370_001 | EnsemblPlants:GSMUA_Achr10T03370_001 | InterPro:LSM_dom_euk/arc | InterPro:LSM_dom_sf |
| InterPro:Lsm7 | UniProt:M0RF14 | PFAM:PF01423 | PIRSF:PIRSF037188 | PANTHER:PTHR10553 | PANTHER:PTHR10553:SF5 |
| SMART:SM00651 | SUPFAM:SSF50182 | UniParc:UPI0002956D45 | : | : | : |
Description
Probable U6 snRNA-associated Sm-like protein LSm7 [Source:GMGC_GENE;Acc:GSMUA_Achr10G03370_001]
Coordinates
chr10:+:11146786..11151824
Molecular Weight (calculated)
11629.0 Da
IEP (calculated)
4.576
GRAVY (calculated)
-0.105
Length
107 amino acids
Sequence
(BLAST)
(BLAST)
001: MIIIPLSGYS SRKETVLDLA KFIDKGVQVK LTGGRQVTGT LKGYDQLLNL VLDEATEFLR DPDDPLKTTD QTRHLGLIIC RGTAVMLVSP TDGTDEIANP
101: FVQPDGA
101: FVQPDGA
1: MSGRKETVLD LAKFVDKGVQ VKLTGGRQVT GTLKGYDQLL NLVLDEAVEF VRDHDDPLKT TDQTRRLGLI VCRGTAVMLV SPTDGTEEIA NPFVTAEAV
Arabidopsis Description
LSM7LSM7 [Source:UniProtKB/TrEMBL;Acc:A0A178VPR3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.