CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 2
plastid 1
mitochondrion 1
extracellular 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH31884	cytosol, nucleus
KRH71562	cytosol, nucleus

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G03870.2	KRH31884	AT5G27720.1	23221597
AT2G03870.2	KRH71562	AT5G27720.1	23221597
AT2G03870.2	KRH31884	AT5G27720.1	23221597
AT2G03870.2	KRH71562	AT5G27720.1	23221597

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH58808	Soybean	cytosol, extracellular, nucleus	98.99	98.99
KRH27506	Soybean	cytosol	92.93	94.85
Solyc09g009640.2.1	Tomato	extracellular, nucleus	90.91	90.91
PGSC0003DMT400006953	Potato	mitochondrion	90.91	90.91
AT2G03870.2	Thale cress	cytosol	89.9	89.9
VIT_13s0064g01230.t01	Wine grape	cytosol	94.95	87.85
GSMUA_Achr10P...	Banana	cytosol	91.92	85.05
EES12932	Sorghum	cytosol	83.84	84.69
Zm00001d002155_P001	Maize	cytosol	82.83	83.67
TraesCS2D01G531700.1	Wheat	cytosol, nucleus, plastid	82.83	82.0
TraesCS2B01G559200.1	Wheat	cytosol, nucleus, plastid	82.83	82.0
TraesCS2A01G528800.1	Wheat	cytosol, nucleus, plastid	82.83	82.0
Os08t0177700-01	Rice	plasma membrane	86.87	79.63
TraesCS7A01G368900.1	Wheat	cytosol	81.82	77.88
CDY45725	Canola	cytosol	89.9	74.17
GSMUA_Achr7P02070_001	Banana	extracellular	42.42	73.68
TraesCS7B01G259600.1	Wheat	cytosol	72.73	69.23
TraesCSU01G104500.2	Wheat	plastid	81.82	55.1
CDY49697	Canola	mitochondrion	88.89	53.99
TraesCS1D01G062600.1	Wheat	cytosol, nucleus, plastid	52.53	53.61
Zm00001d026392_P002	Maize	mitochondrion	78.79	53.06
KRH28926	Soybean	nucleus	29.29	36.71
KRH67942	Soybean	cytosol	28.28	35.44
KRG96200	Soybean	nucleus	28.28	35.44
Bra025138.1-P	Field mustard	golgi	86.87	34.82
CDX83524	Canola	golgi	86.87	33.59
CDY48065	Canola	golgi	86.87	25.67

Protein Annotations

EntrezGene:100306498	MapMan:16.4.3.7	Gene3D:2.30.30.100	EMBL:ACUP02004823	EMBL:BT090631	UniProt:C6SZM9
EnsemblPlantsGene:GLYMA_08G105900	GO:GO:0000398	GO:GO:0000956	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005688
GO:GO:0005689	GO:GO:0006139	GO:GO:0006396	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009987	GO:GO:0030529	GO:GO:0071004	GO:GO:0071013	GO:GO:0097526	GO:GO:1990726
EnsemblPlants:KRH42700	ProteinID:KRH42700	ProteinID:KRH42700.1	InterPro:LSM_dom_euk/arc	InterPro:LSM_dom_sf	InterPro:Lsm7
PFAM:PF01423	PIRSF:PIRSF037188	PANTHER:PTHR10553	PANTHER:PTHR10553:SF5	SMART:SM00651	SUPFAM:SSF50182
UniParc:UPI00019AA9F6	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr8:-:8181738..8184972

Molecular Weight (calculated)

10736.9 Da

IEP (calculated)

4.417

GRAVY (calculated)

-0.252

Length

99 amino acids

Sequence
(BLAST)

1: MSGRKETVLD LAKFVDKGVQ VKLTGGRQVT GTLKGYDQLL NLVLDEAVEF LRDPDDPLKT TDQTRNLGLI VCRGTAVMLV SPTDGTDEIA NPFMQPDGS

Best Arabidopsis Sequence Match ( AT2G03870.1 )
(BLAST)

1: MSGRKETVLD LAKFVDKGVQ VKLTGGRQVT GTLKGYDQLL NLVLDEAVEF VRDHDDPLKT TDQTRRLGLI VCRGTAVMLV SPTDGTEEIA NPFVTAEAV

Arabidopsis Description

LSM7LSM7 [Source:UniProtKB/TrEMBL;Acc:A0A178VPR3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.