Factsheet for Os08t0177700-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 2
cytosol 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
YLoc:	nucleus

plasma membrane: 27800704

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0256900-01	cytosol, nucleus

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G03870.2	Os01t0256900-01	AT5G27720.1	23221597
AT2G03870.2	Os01t0256900-01	AT5G27720.1	23221597

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH58808	Soybean	cytosol, extracellular, nucleus	79.63	86.87
KRH42700	Soybean	cytosol, extracellular, nucleus	79.63	86.87
KRH27506	Soybean	cytosol	77.78	86.6
TraesCS7A01G368900.1	Wheat	cytosol	83.33	86.54
AT2G03870.2	Thale cress	cytosol	76.85	83.84
Solyc09g009640.2.1	Tomato	extracellular, nucleus	75.93	82.83
PGSC0003DMT400006953	Potato	mitochondrion	75.93	82.83
VIT_13s0064g01230.t01	Wine grape	cytosol	78.7	79.44
GSMUA_Achr10P...	Banana	cytosol	77.78	78.5
TraesCS7B01G259600.1	Wheat	cytosol	75.0	77.88
CDY45725	Canola	cytosol	76.85	69.17
GSMUA_Achr7P02070_001	Banana	extracellular	32.41	61.4
TraesCSU01G104500.2	Wheat	plastid	83.33	61.22
TraesCS1D01G062600.1	Wheat	cytosol, nucleus, plastid	49.07	54.64
CDY49697	Canola	mitochondrion	75.93	50.31
Os07t0608700-02	Rice	cytosol	25.93	35.0
Os03t0410900-01	Rice	nucleus	25.0	33.75
Bra025138.1-P	Field mustard	golgi	72.22	31.58
CDX83524	Canola	golgi	72.22	30.47
CDY48065	Canola	golgi	72.22	23.28

Protein Annotations

MapMan:16.4.3.7	Gene3D:2.30.30.100	UniProt:A0A0P0XCL4	ProteinID:BAT04083.1	GO:GO:0000398	GO:GO:0000956
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005688	GO:GO:0005689	GO:GO:0006139	GO:GO:0006396
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0071004	GO:GO:0071013
GO:GO:0097526	GO:GO:1990726	InterPro:LSM_dom_euk/arc	InterPro:LSM_dom_sf	InterPro:Lsm7	EnsemblPlantsGene:Os08g0177700
EnsemblPlants:Os08t0177700-01	PFAM:PF01423	PIRSF:PIRSF037188	PANTHER:PTHR10553	PANTHER:PTHR10553:SF5	SMART:SM00651
SUPFAM:SSF50182	UniParc:UPI000393974F	:	:	:	:

Description

Similar to LSM7-like. (Os08t0177700-01)

Coordinates

chr8:+:4562440..4565329

Molecular Weight (calculated)

11748.1 Da

IEP (calculated)

5.173

GRAVY (calculated)

-0.424

Length

108 amino acids

Sequence
(BLAST)

001: SDQRPRLRSG MSGRKETVLD LAKFVDKGVQ VKLTGGRQVT GTLKGYDQLL NLVLDEAVEF EREQDDPLKL SGKTRQLGLI VCRGTAVMLV SPTDGTDEIA
101: NPFQSDGA

Best Arabidopsis Sequence Match ( AT2G03870.1 )
(BLAST)

1: MSGRKETVLD LAKFVDKGVQ VKLTGGRQVT GTLKGYDQLL NLVLDEAVEF VRDHDDPLKT TDQTRRLGLI VCRGTAVMLV SPTDGTEEIA NPFVTAEAV

Arabidopsis Description

LSM7LSM7 [Source:UniProtKB/TrEMBL;Acc:A0A178VPR3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.