Factsheet for Os07t0608700-02

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 3
mitochondrion 2
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
EpiLoc:	cytosol
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER99690	Sorghum	cytosol	96.25	96.25
GSMUA_AchrUn_...	Banana	cytosol	93.75	94.94
Os03t0410900-01	Rice	nucleus	92.5	92.5
GSMUA_Achr5P23160_001	Banana	cytosol	91.25	92.41
GSMUA_Achr3P20170_001	Banana	cytosol	91.25	92.41
KRH67942	Soybean	cytosol	90.0	91.14
KRG96200	Soybean	nucleus	90.0	91.14
VIT_08s0007g03130.t01	Wine grape	cytosol	90.0	90.0
Solyc05g055260.2.1	Tomato	nucleus	88.75	88.75
PGSC0003DMT400060122	Potato	cytosol	88.75	88.75
KRH28926	Soybean	nucleus	87.5	88.61
Solyc11g006820.1.1	Tomato	cytosol, nucleus	88.75	87.65
PGSC0003DMT400061605	Potato	cytosol	87.5	86.42
AT2G23930.1	Thale cress	cytosol	86.25	86.25
Bra002044.1-P	Field mustard	cytosol	85.0	86.08
AT3G11500.2	Thale cress	cytosol	85.0	86.08
CDY23693	Canola	cytosol	85.0	86.08
Bra034726.1-P	Field mustard	cytosol	85.0	86.08
Bra034834.1-P	Field mustard	cytosol	85.0	86.08
CDY01024	Canola	cytosol	85.0	86.08
CDY08518	Canola	cytosol	85.0	86.08
Bra032135.1-P	Field mustard	cytosol	85.0	85.0
CDY65184	Canola	cytosol	85.0	85.0
CDY39683	Canola	cytosol	85.0	85.0
TraesCS2A01G171800.1	Wheat	cytosol	83.75	84.81
TraesCS2B01G198200.1	Wheat	cytosol	83.75	82.72
HORVU2Hr1G031890.2	Barley	cytosol	90.0	81.82
Os08t0177700-01	Rice	plasma membrane	35.0	25.93

Protein Annotations

MapMan:16.4.2.7	Gene3D:2.30.30.100	EntrezGene:4343870	EMBL:AK243024	ProteinID:BAC84637.1	ProteinID:BAT02589.1
ProteinID:EEE67563.1	GO:GO:0000387	GO:GO:0000398	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005681
GO:GO:0005682	GO:GO:0005685	GO:GO:0005686	GO:GO:0005687	GO:GO:0005689	GO:GO:0005737
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0016043	GO:GO:0034719	GO:GO:0043186	GO:GO:0071004	GO:GO:0071011	GO:GO:0071013
GO:GO:0097526	InterPro:LSM_dom_euk/arc	InterPro:LSM_dom_sf	EnsemblPlantsGene:Os07g0608700	EnsemblPlants:Os07t0608700-02	PFAM:PF01423
PIRSF:PIRSF037188	PANTHER:PTHR10553	PANTHER:PTHR10553:SF15	UniProt:Q6YTY0	SMART:SM00651	SUPFAM:SSF50182
InterPro:Sm_G	UniParc:UPI00001BF771	RefSeq:XP_015647578.1	:	:	:

Description

Similar to Small nuclear ribonucleoprotein G (snRNP-G) (Sm protein G) (Sm-G) (SmG). (Os07t0608700-01);Similar to small nuclear ribonucleoprotein G. (Os07t0608700-02)

Coordinates

chr7:-:25036657..25039074

Molecular Weight (calculated)

8940.0 Da

IEP (calculated)

9.840

GRAVY (calculated)

-0.301

Length

80 amino acids

Sequence
(BLAST)

1: MSRSGQPPDL KKYMDKKLQI KLNANRVVIG TLRGFDQFMN LVVDNTVEVN GNEKNDIGMV VIRGNSVVMI EALEPVPKPQ

Best Arabidopsis Sequence Match ( AT2G23930.1 )
(BLAST)

1: MSRSGQPPDL KKYMDKKLQI KLNANRMVTG TLRGFDQFMN LVVDNTVEVN GNDKTDIGMV VIRGNSIVTV EALEPVGRSS

Arabidopsis Description

SNRNP-GProbable small nuclear ribonucleoprotein G [Source:UniProtKB/Swiss-Prot;Acc:O82221]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.