CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 3
mitochondrion 2
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
EpiLoc:	cytosol
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

nucleus: 21132161
nucleus: 27291164
endoplasmic reticulum: 28499913
nucleus: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH67942	Soybean	cytosol	100.0	100.0
KRH28926	Soybean	nucleus	96.2	96.2
VIT_08s0007g03130.t01	Wine grape	cytosol	96.2	95.0
GSMUA_AchrUn_...	Banana	cytosol	94.94	94.94
AT3G11500.2	Thale cress	cytosol	92.41	92.41
GSMUA_Achr5P23160_001	Banana	cytosol	92.41	92.41
GSMUA_Achr3P20170_001	Banana	cytosol	92.41	92.41
CDY23693	Canola	cytosol	92.41	92.41
CDY01024	Canola	cytosol	92.41	92.41
Bra034834.1-P	Field mustard	cytosol	92.41	92.41
CDY08518	Canola	cytosol	92.41	92.41
CDY39683	Canola	cytosol	92.41	91.25
CDY65184	Canola	cytosol	92.41	91.25
Bra032135.1-P	Field mustard	cytosol	92.41	91.25
AT2G23930.1	Thale cress	cytosol	92.41	91.25
Bra034726.1-P	Field mustard	cytosol	91.14	91.14
Bra002044.1-P	Field mustard	cytosol	91.14	91.14
Os07t0608700-02	Rice	cytosol	91.14	90.0
Solyc05g055260.2.1	Tomato	nucleus	89.87	88.75
PGSC0003DMT400060122	Potato	cytosol	89.87	88.75
EER99690	Sorghum	cytosol	89.87	88.75
Zm00001d029483_P001	Maize	cytosol	88.61	87.5
Solyc11g006820.1.1	Tomato	cytosol, nucleus	88.61	86.42
EER94701	Sorghum	cytosol	88.61	86.42
Zm00001d047271_P002	Maize	cytosol	87.34	86.25
Os03t0410900-01	Rice	nucleus	87.34	86.25
PGSC0003DMT400061605	Potato	cytosol	87.34	85.19
TraesCS2A01G171800.1	Wheat	cytosol	79.75	79.75
TraesCS2B01G198200.1	Wheat	cytosol	79.75	77.78
HORVU2Hr1G031890.2	Barley	cytosol	86.08	77.27
Zm00001d037942_P001	Maize	cytosol, nucleus, plastid	51.9	35.65
Zm00001d052555_P001	Maize	cytosol	51.9	35.65
KRH27506	Soybean	cytosol	35.44	28.87
KRH58808	Soybean	cytosol, extracellular, nucleus	35.44	28.28
KRH42700	Soybean	cytosol, extracellular, nucleus	35.44	28.28
Zm00001d028673_P001	Maize	extracellular	50.63	22.86

Protein Annotations

EntrezGene:100305530	EntrezGene:100799718	MapMan:16.4.2.7	Gene3D:2.30.30.100	EMBL:ACUP02002091	EMBL:ACUP02012147
EMBL:BT089172	UniProt:C6SVH9	EnsemblPlantsGene:GLYMA_19G195100	GO:GO:0000387	GO:GO:0000398	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005681	GO:GO:0005682	GO:GO:0005685	GO:GO:0005686	GO:GO:0005687
GO:GO:0005689	GO:GO:0005737	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016043	GO:GO:0030529	GO:GO:0034719	GO:GO:0043186	GO:GO:0071004	GO:GO:0071011
GO:GO:0071013	GO:GO:0097526	EnsemblPlants:KRG96200	ProteinID:KRG96200	ProteinID:KRG96200.1	ProteinID:KRH67942.1
InterPro:LSM_dom_euk/arc	InterPro:LSM_dom_sf	PFAM:PF01423	PIRSF:PIRSF037188	PANTHER:PTHR10553	PANTHER:PTHR10553:SF15
SMART:SM00651	SUPFAM:SSF50182	InterPro:Sm_G	UniParc:UPI00019AAA07	:	:

Description

hypothetical protein

Coordinates

chr19:-:45245692..45247096

Molecular Weight (calculated)

8834.8 Da

IEP (calculated)

9.889

GRAVY (calculated)

-0.351

Length

79 amino acids

Sequence
(BLAST)

1: MSRSGQPPDL KKYMDKKLQI KLNANRMVVG TLRGFDQFMN LVVDNTVEVN GNEKNDIGMV VIRGNSVVTV EALEPVNRT

Best Arabidopsis Sequence Match ( AT2G23930.1 )
(BLAST)

1: MSRSGQPPDL KKYMDKKLQI KLNANRMVTG TLRGFDQFMN LVVDNTVEVN GNDKTDIGMV VIRGNSIVTV EALEPVGRSS

Arabidopsis Description

SNRNP-GProbable small nuclear ribonucleoprotein G [Source:UniProtKB/Swiss-Prot;Acc:O82221]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.