Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 4
- mitochondrion 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra002044.1-P | Field mustard | cytosol | 100.0 | 100.0 |
| Bra034834.1-P | Field mustard | cytosol | 98.73 | 98.73 |
| AT3G11500.2 | Thale cress | cytosol | 98.73 | 98.73 |
| Bra032135.1-P | Field mustard | cytosol | 98.73 | 97.5 |
| VIT_08s0007g03130.t01 | Wine grape | cytosol | 92.41 | 91.25 |
| KRH67942 | Soybean | cytosol | 91.14 | 91.14 |
| KRG96200 | Soybean | nucleus | 91.14 | 91.14 |
| Zm00001d029483_P001 | Maize | cytosol | 89.87 | 88.75 |
| GSMUA_AchrUn_... | Banana | cytosol | 88.61 | 88.61 |
| KRH28926 | Soybean | nucleus | 88.61 | 88.61 |
| EER94701 | Sorghum | cytosol | 89.87 | 87.65 |
| Os03t0410900-01 | Rice | nucleus | 88.61 | 87.5 |
| Zm00001d047271_P002 | Maize | cytosol | 88.61 | 87.5 |
| PGSC0003DMT400060122 | Potato | cytosol | 87.34 | 86.25 |
| Solyc05g055260.2.1 | Tomato | nucleus | 87.34 | 86.25 |
| GSMUA_Achr5P23160_001 | Banana | cytosol | 86.08 | 86.08 |
| GSMUA_Achr3P20170_001 | Banana | cytosol | 86.08 | 86.08 |
| Os07t0608700-02 | Rice | cytosol | 86.08 | 85.0 |
| Solyc11g006820.1.1 | Tomato | cytosol, nucleus | 86.08 | 83.95 |
| EER99690 | Sorghum | cytosol | 84.81 | 83.75 |
| PGSC0003DMT400061605 | Potato | cytosol | 84.81 | 82.72 |
| TraesCS2A01G171800.1 | Wheat | cytosol | 81.01 | 81.01 |
| TraesCS2B01G198200.1 | Wheat | cytosol | 81.01 | 79.01 |
| HORVU2Hr1G031890.2 | Barley | cytosol | 87.34 | 78.41 |
| Zm00001d037942_P001 | Maize | cytosol, nucleus, plastid | 51.9 | 35.65 |
| Zm00001d052555_P001 | Maize | cytosol | 51.9 | 35.65 |
| Zm00001d028673_P001 | Maize | extracellular | 50.63 | 22.86 |
| Bra025138.1-P | Field mustard | golgi | 34.18 | 10.93 |
Protein Annotations
| MapMan:16.4.2.7 | Gene3D:2.30.30.100 | EnsemblPlantsGene:Bra034726 | EnsemblPlants:Bra034726.1 | EnsemblPlants:Bra034726.1-P | GO:GO:0000387 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005681 | GO:GO:0006139 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0030529 | InterPro:LSM_dom_euk/arc |
| InterPro:LSM_dom_sf | UniProt:M4CCW3 | PFAM:PF01423 | PIRSF:PIRSF037188 | PANTHER:PTHR10553 | PANTHER:PTHR10553:SF15 |
| SMART:SM00651 | SUPFAM:SSF50182 | InterPro:Sm_G | UniParc:UPI00019AAA0D | : | : |
Description
AT3G11500 (E=4e-039) | small nuclear ribonucleoprotein G, putative / snRNP-G, putative / Sm protein G, putative
Coordinates
chrA05:-:21177013..21177715
Molecular Weight (calculated)
8721.6 Da
IEP (calculated)
9.134
GRAVY (calculated)
-0.306
Length
79 amino acids
Sequence
(BLAST)
(BLAST)
1: MSRSGQPPDL KKYMDKKLQI KLNANRTVVG TLRGFDQFMN LVVDNTVEVN GDDKTDIGMV VIRGNSIVTV EALEPVGRS
1: MSRSGQPPDL KKYMDKKLQI KLNANRMVVG TLRGFDQFMN LVVDNTVEVN GDDKTDIGMV VIRGNSIVTV EALEPVGRS
Arabidopsis Description
Putative small nuclear ribonucleoprotein polypeptide G [Source:UniProtKB/TrEMBL;Acc:Q9CAX7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.