Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- cytosol 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER94701 | Sorghum | cytosol | 97.5 | 96.3 |
| Zm00001d047271_P002 | Maize | cytosol | 96.25 | 96.25 |
| GSMUA_AchrUn_... | Banana | cytosol | 92.5 | 93.67 |
| Os03t0410900-01 | Rice | nucleus | 92.5 | 92.5 |
| GSMUA_Achr5P23160_001 | Banana | cytosol | 90.0 | 91.14 |
| GSMUA_Achr3P20170_001 | Banana | cytosol | 90.0 | 91.14 |
| AT2G23930.1 | Thale cress | cytosol | 90.0 | 90.0 |
| VIT_08s0007g03130.t01 | Wine grape | cytosol | 90.0 | 90.0 |
| CDY23693 | Canola | cytosol | 88.75 | 89.87 |
| CDY08518 | Canola | cytosol | 88.75 | 89.87 |
| CDY01024 | Canola | cytosol | 88.75 | 89.87 |
| Bra034834.1-P | Field mustard | cytosol | 88.75 | 89.87 |
| Bra034726.1-P | Field mustard | cytosol | 88.75 | 89.87 |
| Bra002044.1-P | Field mustard | cytosol | 88.75 | 89.87 |
| AT3G11500.2 | Thale cress | cytosol | 88.75 | 89.87 |
| Solyc05g055260.2.1 | Tomato | nucleus | 88.75 | 88.75 |
| PGSC0003DMT400060122 | Potato | cytosol | 88.75 | 88.75 |
| CDY65184 | Canola | cytosol | 88.75 | 88.75 |
| CDY39683 | Canola | cytosol | 88.75 | 88.75 |
| Bra032135.1-P | Field mustard | cytosol | 88.75 | 88.75 |
| KRG96200 | Soybean | nucleus | 87.5 | 88.61 |
| KRH67942 | Soybean | cytosol | 87.5 | 88.61 |
| Solyc11g006820.1.1 | Tomato | cytosol, nucleus | 88.75 | 87.65 |
| PGSC0003DMT400061605 | Potato | cytosol | 87.5 | 86.42 |
| KRH28926 | Soybean | nucleus | 85.0 | 86.08 |
| Zm00001d037942_P001 | Maize | cytosol, nucleus, plastid | 57.5 | 40.0 |
| Zm00001d052555_P001 | Maize | cytosol | 57.5 | 40.0 |
| Zm00001d002155_P001 | Maize | cytosol | 33.75 | 27.55 |
| Zm00001d028673_P001 | Maize | extracellular | 56.25 | 25.71 |
| Zm00001d026392_P002 | Maize | mitochondrion | 33.75 | 18.37 |
Protein Annotations
| EntrezGene:100282336 | MapMan:16.4.2.7 | Gene3D:2.30.30.100 | UniProt:B4FMM6 | EMBL:BT038364 | EMBL:EU954582 |
| EMBL:EU960531 | EMBL:EU975501 | GO:GO:0000387 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005681 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 |
| GO:GO:0016043 | GO:GO:0019013 | GO:GO:0030529 | InterPro:LSM_dom_euk/arc | InterPro:LSM_dom_sf | ProteinID:ONL98831.1 |
| PFAM:PF01423 | PIRSF:PIRSF037188 | PANTHER:PTHR10553 | PANTHER:PTHR10553:SF15 | SMART:SM00651 | SUPFAM:SSF50182 |
| InterPro:Sm_G | UniParc:UPI00017B6CC5 | EnsemblPlantsGene:Zm00001d029483 | EnsemblPlants:Zm00001d029483_P001 | EnsemblPlants:Zm00001d029483_T001 | : |
Description
Probable small nuclear ribonucleoprotein G
Coordinates
chr1:+:72602928..72605955
Molecular Weight (calculated)
8923.0 Da
IEP (calculated)
9.889
GRAVY (calculated)
-0.245
Length
80 amino acids
Sequence
(BLAST)
(BLAST)
1: MSRSGQPPDL KKYMDKKLQI KMNANRVVIG TLRGFDQFMN LVVDNTVEVN GNDKTDIGMV VIRGNSVVMI EALEPVARSQ
1: MSRSGQPPDL KKYMDKKLQI KLNANRMVTG TLRGFDQFMN LVVDNTVEVN GNDKTDIGMV VIRGNSIVTV EALEPVGRSS
Arabidopsis Description
SNRNP-GProbable small nuclear ribonucleoprotein G [Source:UniProtKB/Swiss-Prot;Acc:O82221]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.