Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d040294_P002 | cytosol, nucleus |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G03870.2 | Zm00001d040294_P002 | AT5G27720.1 | 23221597 |
| AT2G03870.2 | Zm00001d040294_P002 | AT5G27720.1 | 23221597 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES12932 | Sorghum | cytosol | 97.96 | 97.96 |
| TraesCS2D01G531700.1 | Wheat | cytosol, nucleus, plastid | 97.96 | 96.0 |
| TraesCS2B01G559200.1 | Wheat | cytosol, nucleus, plastid | 97.96 | 96.0 |
| TraesCS2A01G528800.1 | Wheat | cytosol, nucleus, plastid | 97.96 | 96.0 |
| AT2G03870.2 | Thale cress | cytosol | 83.67 | 82.83 |
| KRH58808 | Soybean | cytosol, extracellular, nucleus | 83.67 | 82.83 |
| KRH42700 | Soybean | cytosol, extracellular, nucleus | 83.67 | 82.83 |
| KRH27506 | Soybean | cytosol | 81.63 | 82.47 |
| PGSC0003DMT400006953 | Potato | mitochondrion | 80.61 | 79.8 |
| Solyc09g009640.2.1 | Tomato | extracellular, nucleus | 80.61 | 79.8 |
| VIT_13s0064g01230.t01 | Wine grape | cytosol | 82.65 | 75.7 |
| GSMUA_Achr10P... | Banana | cytosol | 79.59 | 72.9 |
| CDY45725 | Canola | cytosol | 81.63 | 66.67 |
| GSMUA_Achr7P02070_001 | Banana | extracellular | 34.69 | 59.65 |
| Zm00001d026392_P002 | Maize | mitochondrion | 86.73 | 57.82 |
| CDY49697 | Canola | mitochondrion | 80.61 | 48.47 |
| Zm00001d047271_P002 | Maize | cytosol | 28.57 | 35.0 |
| Zm00001d029483_P001 | Maize | cytosol | 27.55 | 33.75 |
| Bra025138.1-P | Field mustard | golgi | 79.59 | 31.58 |
| CDX83524 | Canola | golgi | 79.59 | 30.47 |
| CDY48065 | Canola | golgi | 79.59 | 23.28 |
| Zm00001d037942_P001 | Maize | cytosol, nucleus, plastid | 24.49 | 20.87 |
| Zm00001d052555_P001 | Maize | cytosol | 24.49 | 20.87 |
| Zm00001d028673_P001 | Maize | extracellular | 22.45 | 12.57 |
Protein Annotations
| EntrezGene:100285982 | MapMan:16.4.3.7 | Gene3D:2.30.30.100 | UniProt:B6U772 | EMBL:EU973087 | EMBL:EU975014 |
| GO:GO:0000398 | GO:GO:0000956 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0006139 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0030529 | InterPro:LSM_dom_euk/arc |
| InterPro:LSM_dom_sf | InterPro:Lsm7 | ProteinID:ONM13256.1 | PFAM:PF01423 | PIRSF:PIRSF037188 | PANTHER:PTHR10553 |
| PANTHER:PTHR10553:SF5 | SMART:SM00651 | SUPFAM:SSF50182 | UniParc:UPI0000E647BE | EnsemblPlantsGene:Zm00001d002155 | EnsemblPlants:Zm00001d002155_P001 |
| EnsemblPlants:Zm00001d002155_T001 | : | : | : | : | : |
Description
LSM7-like
Coordinates
chr2:+:6874784..6877507
Molecular Weight (calculated)
10549.7 Da
IEP (calculated)
4.618
GRAVY (calculated)
-0.199
Length
98 amino acids
Sequence
(BLAST)
(BLAST)
1: MAGRKETALD LAKFVDKGVQ VKLTGGRQVT GTLKGYDQLL NLVLDEAVEY EREQDDPLKL SGKTRQLGLI VCRGTAVMLV SPTDGTDEIA NPFLAEGA
1: MSGRKETVLD LAKFVDKGVQ VKLTGGRQVT GTLKGYDQLL NLVLDEAVEF VRDHDDPLKT TDQTRRLGLI VCRGTAVMLV SPTDGTEEIA NPFVTAEAV
Arabidopsis Description
LSM7LSM7 [Source:UniProtKB/TrEMBL;Acc:A0A178VPR3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.