Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH58808 | Soybean | cytosol, extracellular, nucleus | 89.9 | 89.9 |
| KRH42700 | Soybean | cytosol, extracellular, nucleus | 89.9 | 89.9 |
| KRH27506 | Soybean | cytosol | 85.86 | 87.63 |
| Solyc09g009640.2.1 | Tomato | extracellular, nucleus | 85.86 | 85.86 |
| PGSC0003DMT400006953 | Potato | mitochondrion | 85.86 | 85.86 |
| Zm00001d002155_P001 | Maize | cytosol | 82.83 | 83.67 |
| EES12932 | Sorghum | cytosol | 81.82 | 82.65 |
| VIT_13s0064g01230.t01 | Wine grape | cytosol | 88.89 | 82.24 |
| TraesCS2A01G528800.1 | Wheat | cytosol, nucleus, plastid | 82.83 | 82.0 |
| TraesCS2B01G559200.1 | Wheat | cytosol, nucleus, plastid | 82.83 | 82.0 |
| TraesCS2D01G531700.1 | Wheat | cytosol, nucleus, plastid | 82.83 | 82.0 |
| GSMUA_Achr10P... | Banana | cytosol | 85.86 | 79.44 |
| CDY45725 | Canola | cytosol | 95.96 | 79.17 |
| TraesCS7A01G368900.1 | Wheat | cytosol | 81.82 | 77.88 |
| Os08t0177700-01 | Rice | plasma membrane | 83.84 | 76.85 |
| GSMUA_Achr7P02070_001 | Banana | extracellular | 41.41 | 71.93 |
| TraesCS7B01G259600.1 | Wheat | cytosol | 72.73 | 69.23 |
| CDY49697 | Canola | mitochondrion | 94.95 | 57.67 |
| TraesCSU01G104500.2 | Wheat | plastid | 81.82 | 55.1 |
| TraesCS1D01G062600.1 | Wheat | cytosol, nucleus, plastid | 52.53 | 53.61 |
| Zm00001d026392_P002 | Maize | mitochondrion | 76.77 | 51.7 |
| Bra025138.1-P | Field mustard | golgi | 90.91 | 36.44 |
| CDX83524 | Canola | golgi | 91.92 | 35.55 |
| AT3G11500.2 | Thale cress | cytosol | 28.28 | 35.44 |
| AT2G23930.1 | Thale cress | cytosol | 28.28 | 35.0 |
| CDY48065 | Canola | golgi | 90.91 | 26.87 |
Protein Annotations
| MapMan:16.4.3.7 | Gene3D:2.30.30.100 | EntrezGene:814913 | UniProt:A0A178VPR3 | ProteinID:AAD24820.1 | ProteinID:AEC05760.1 |
| ProteinID:AEC05761.1 | EMBL:AK227358 | ArrayExpress:AT2G03870 | EnsemblPlantsGene:AT2G03870 | RefSeq:AT2G03870 | TAIR:AT2G03870 |
| RefSeq:AT2G03870-TAIR-G | EnsemblPlants:AT2G03870.2 | TAIR:AT2G03870.2 | EMBL:BT003087 | GO:GO:0000398 | GO:GO:0000956 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005681 | GO:GO:0005688 | GO:GO:0005689 | GO:GO:0005737 |
| GO:GO:0006139 | GO:GO:0006396 | GO:GO:0006397 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008380 |
| GO:GO:0009056 | GO:GO:0009987 | GO:GO:0030529 | GO:GO:0071004 | GO:GO:0071013 | GO:GO:0097526 |
| GO:GO:1990726 | InterPro:LSM_dom_euk/arc | InterPro:LSM_dom_sf | InterPro:Lsm7 | RefSeq:NP_178480.1 | RefSeq:NP_849931.1 |
| ProteinID:OAP07215.1 | PFAM:PF01423 | PIRSF:PIRSF037188 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 |
| PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PANTHER:PTHR10553 | PANTHER:PTHR10553:SF5 |
| UniProt:Q9SI54 | SMART:SM00651 | SUPFAM:SSF50182 | UniParc:UPI000000BED7 | : | : |
Description
LSM7LSM7 [Source:UniProtKB/TrEMBL;Acc:A0A178VPR3]
Coordinates
chr2:+:1179971..1181512
Molecular Weight (calculated)
10774.0 Da
IEP (calculated)
4.811
GRAVY (calculated)
-0.115
Length
99 amino acids
Sequence
(BLAST)
(BLAST)
1: MSGRKETVLD LAKFVDKGVQ VKLTGGRQVT GTLKGYDQLL NLVLDEAVEF VRDHDDPLKT TDQTRRLGLI VCRGTAVMLV SPTDGTEEIA NPFVTAEAV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.