CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH31884	cytosol, nucleus
KRH71562	cytosol, nucleus

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G03870.2	KRH31884	AT5G27720.1	23221597
AT2G03870.2	KRH71562	AT5G27720.1	23221597
AT2G03870.2	KRH31884	AT5G27720.1	23221597
AT2G03870.2	KRH71562	AT5G27720.1	23221597

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH58808	Soybean	cytosol, extracellular, nucleus	95.88	93.94
KRH42700	Soybean	cytosol, extracellular, nucleus	94.85	92.93
Solyc09g009640.2.1	Tomato	extracellular, nucleus	92.78	90.91
PGSC0003DMT400006953	Potato	mitochondrion	92.78	90.91
VIT_13s0064g01230.t01	Wine grape	cytosol	94.85	85.98
AT2G03870.2	Thale cress	cytosol	87.63	85.86
EES12932	Sorghum	cytosol	83.51	82.65
GSMUA_Achr10P...	Banana	cytosol	90.72	82.24
Zm00001d002155_P001	Maize	cytosol	82.47	81.63
TraesCS2D01G531700.1	Wheat	cytosol, nucleus, plastid	82.47	80.0
TraesCS2B01G559200.1	Wheat	cytosol, nucleus, plastid	82.47	80.0
TraesCS2A01G528800.1	Wheat	cytosol, nucleus, plastid	82.47	80.0
Os08t0177700-01	Rice	plasma membrane	86.6	77.78
TraesCS7A01G368900.1	Wheat	cytosol	80.41	75.0
CDY45725	Canola	cytosol	87.63	70.83
GSMUA_Achr7P02070_001	Banana	extracellular	41.24	70.18
TraesCS7B01G259600.1	Wheat	cytosol	72.16	67.31
TraesCSU01G104500.2	Wheat	plastid	80.41	53.06
Zm00001d026392_P002	Maize	mitochondrion	78.35	51.7
TraesCS1D01G062600.1	Wheat	cytosol, nucleus, plastid	51.55	51.55
CDY49697	Canola	mitochondrion	86.6	51.53
KRH28926	Soybean	nucleus	29.9	36.71
KRH67942	Soybean	cytosol	28.87	35.44
KRG96200	Soybean	nucleus	28.87	35.44
Bra025138.1-P	Field mustard	golgi	84.54	33.2
CDX83524	Canola	golgi	84.54	32.03
CDY48065	Canola	golgi	84.54	24.48

Protein Annotations

EntrezGene:100789536	MapMan:16.4.3.7	Gene3D:2.30.30.100	EMBL:ACUP02007812	EnsemblPlantsGene:GLYMA_12G239000	GO:GO:0000398
GO:GO:0000956	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005688	GO:GO:0005689	GO:GO:0006139
GO:GO:0006396	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0030529
GO:GO:0071004	GO:GO:0071013	GO:GO:0097526	GO:GO:1990726	UniProt:K7LWN2	EnsemblPlants:KRH27506
ProteinID:KRH27506	ProteinID:KRH27506.1	InterPro:LSM_dom_euk/arc	InterPro:LSM_dom_sf	InterPro:Lsm7	PFAM:PF01423
PIRSF:PIRSF037188	PANTHER:PTHR10553	PANTHER:PTHR10553:SF5	SMART:SM00651	SUPFAM:SSF50182	UniParc:UPI000233CEAC

Description

hypothetical protein

Coordinates

chr12:+:39797400..39801497

Molecular Weight (calculated)

10532.6 Da

IEP (calculated)

4.417

GRAVY (calculated)

-0.237

Length

97 amino acids

Sequence
(BLAST)

1: MSGRKETVLD LAKFVDKGVQ VKLTGGRQGT LKGYDQLLNL VLDEAVEFLR DPDDPLKTTD QNRSLGLIVF RGTAVMLVSP TDGTDEIANP FIQPDGA

Best Arabidopsis Sequence Match ( AT2G03870.1 )
(BLAST)

1: MSGRKETVLD LAKFVDKGVQ VKLTGGRQVT GTLKGYDQLL NLVLDEAVEF VRDHDDPLKT TDQTRRLGLI VCRGTAVMLV SPTDGTEEIA NPFVTAEAV

Arabidopsis Description

LSM7LSM7 [Source:UniProtKB/TrEMBL;Acc:A0A178VPR3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.