Factsheet for Bra025138.1-P

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

extracellular 5
endoplasmic reticulum 5
vacuole 5
plasma membrane 5
golgi 7
cytosol 1
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	secretory
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	golgi
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	golgi

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra009946.1-P	cytosol, nucleus
Bra036615.1-P	cytosol, nucleus

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G03870.2	Bra009946.1-P	AT5G27720.1	23221597
AT2G03870.2	Bra036615.1-P	AT5G27720.1	23221597
AT2G03870.2	Bra009946.1-P	AT5G27720.1	23221597
AT2G03870.2	Bra036615.1-P	AT5G27720.1	23221597

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT2G03870.2	Thale cress	cytosol	36.44	90.91
CDX83524	Canola	golgi	93.52	90.23
KRH42700	Soybean	cytosol, extracellular, nucleus	34.82	86.87
KRH58808	Soybean	cytosol, extracellular, nucleus	34.82	86.87
KRH27506	Soybean	cytosol	33.2	84.54
PGSC0003DMT400006953	Potato	mitochondrion	33.2	82.83
Solyc09g009640.2.1	Tomato	extracellular, nucleus	33.2	82.83
VIT_13s0064g01230.t01	Wine grape	cytosol	35.22	81.31
EES12932	Sorghum	cytosol	31.58	79.59
Zm00001d002155_P001	Maize	cytosol	31.58	79.59
TraesCS2D01G531700.1	Wheat	cytosol, nucleus, plastid	31.98	79.0
TraesCS2B01G559200.1	Wheat	cytosol, nucleus, plastid	31.98	79.0
TraesCS2A01G528800.1	Wheat	cytosol, nucleus, plastid	31.98	79.0
GSMUA_Achr10P...	Banana	cytosol	34.01	78.5
TraesCS7A01G368900.1	Wheat	cytosol	30.77	73.08
Os08t0177700-01	Rice	plasma membrane	31.58	72.22
GSMUA_Achr7P02070_001	Banana	extracellular	16.19	70.18
CDY48065	Canola	golgi	94.74	69.85
TraesCS7B01G259600.1	Wheat	cytosol	27.13	64.42
TraesCS1D01G062600.1	Wheat	cytosol, nucleus, plastid	20.65	52.58
TraesCSU01G104500.2	Wheat	plastid	31.17	52.38
Zm00001d026392_P002	Maize	mitochondrion	29.15	48.98
Bra034834.1-P	Field mustard	cytosol	10.93	34.18
Bra034726.1-P	Field mustard	cytosol	10.93	34.18
Bra002044.1-P	Field mustard	cytosol	10.93	34.18
Bra032135.1-P	Field mustard	cytosol	10.93	33.75

Protein Annotations

MapMan:16.4.3.7	Gene3D:2.30.30.100	EnsemblPlantsGene:Bra025138	EnsemblPlants:Bra025138.1	EnsemblPlants:Bra025138.1-P	GO:GO:0000398
GO:GO:0000956	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0030529	InterPro:LSM_dom_euk/arc	InterPro:LSM_dom_sf
InterPro:Lsm7	UniProt:M4E8N2	PFAM:PF01423	PANTHER:PTHR10553	PANTHER:PTHR10553:SF5	SMART:SM00651
SUPFAM:SSF50182	SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI000253F7F0	SEG:seg	:

Description

AT2G03870 (E=4e-045) | small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative

Coordinates

chrA06:-:23274907..23278676

Molecular Weight (calculated)

27305.2 Da

IEP (calculated)

8.889

GRAVY (calculated)

-0.265

Length

247 amino acids

Sequence
(BLAST)

001: MKLTRVTFLF CALAFLLLIT PTCSLKLHAR FSSPSQGVSE KIVIGMAPPR KLMIISSEHE NVMKSGAQES SSEQPRVTSS SGKSKNEEKR LGEEEEEKAL
101: SKYLSMDYPR IKQNPKSLVW GLSLPALRFT HCNMMAGKYV TSVEHALLYH GRKETVLDLA KFVDKGVQVK LTGGRQVTGT LKGYDQLLNL VLDGALESVR
201: DHDDPLKTTD QTRRLGLIVC RGTAVMLVSP TDGTEEIANP FNQPEAL

Best Arabidopsis Sequence Match ( AT2G03870.1 )
(BLAST)

1: MSGRKETVLD LAKFVDKGVQ VKLTGGRQVT GTLKGYDQLL NLVLDEAVEF VRDHDDPLKT TDQTRRLGLI VCRGTAVMLV SPTDGTEEIA NPFVTAEAV

Arabidopsis Description

LSM7LSM7 [Source:UniProtKB/TrEMBL;Acc:A0A178VPR3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.