CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX80625	cytosol, nucleus
CDX86143	cytosol, nucleus
CDY19734	cytosol, nucleus

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G03870.2	CDX80625	AT5G27720.1	23221597
AT2G03870.2	CDX86143	AT5G27720.1	23221597
AT2G03870.2	CDY19734	AT5G27720.1	23221597
AT2G03870.2	CDX80625	AT5G27720.1	23221597
AT2G03870.2	CDX86143	AT5G27720.1	23221597
AT2G03870.2	CDY19734	AT5G27720.1	23221597

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT2G03870.2	Thale cress	cytosol	57.67	94.95
CDY45725	Canola	cytosol	65.64	89.17
KRH58808	Soybean	cytosol, extracellular, nucleus	53.99	88.89
KRH42700	Soybean	cytosol, extracellular, nucleus	53.99	88.89
KRH27506	Soybean	cytosol	51.53	86.6
Solyc09g009640.2.1	Tomato	extracellular, nucleus	52.15	85.86
PGSC0003DMT400006953	Potato	mitochondrion	52.15	85.86
VIT_13s0064g01230.t01	Wine grape	cytosol	53.37	81.31
Zm00001d002155_P001	Maize	cytosol	48.47	80.61
EES12932	Sorghum	cytosol	48.47	80.61
TraesCS2A01G528800.1	Wheat	cytosol, nucleus, plastid	49.08	80.0
TraesCS2B01G559200.1	Wheat	cytosol, nucleus, plastid	49.08	80.0
TraesCS2D01G531700.1	Wheat	cytosol, nucleus, plastid	49.08	80.0
GSMUA_Achr10P...	Banana	cytosol	52.15	79.44
Os08t0177700-01	Rice	plasma membrane	50.31	75.93
TraesCS7A01G368900.1	Wheat	cytosol	47.24	74.04
GSMUA_Achr7P02070_001	Banana	extracellular	23.93	68.42
TraesCS7B01G259600.1	Wheat	cytosol	41.72	65.38
TraesCSU01G104500.2	Wheat	plastid	48.47	53.74
Zm00001d026392_P002	Maize	mitochondrion	48.47	53.74
TraesCS1D01G062600.1	Wheat	cytosol, nucleus, plastid	31.9	53.61
CDX83524	Canola	golgi	57.67	36.72
CDY23693	Canola	cytosol	17.18	35.44
CDY08518	Canola	cytosol	17.18	35.44
CDY01024	Canola	cytosol	17.18	35.44
CDY65184	Canola	cytosol	17.18	35.0
CDY39683	Canola	cytosol	17.18	35.0
CDY48065	Canola	golgi	57.06	27.76

Protein Annotations

MapMan:16.4.3.7	Gene3D:2.30.30.100	UniProt:A0A078IID1	EnsemblPlants:CDY49697	ProteinID:CDY49697	ProteinID:CDY49697.1
GO:GO:0000398	GO:GO:0000956	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0030529	EnsemblPlantsGene:GSBRNA2T00093595001
InterPro:LSM_dom_euk/arc	InterPro:LSM_dom_sf	InterPro:Lsm7	PFAM:PF01423	PIRSF:PIRSF037188	PANTHER:PTHR10553
PANTHER:PTHR10553:SF5	SMART:SM00651	SUPFAM:SSF50182	UniParc:UPI0004EEAEFE	SEG:seg	:

Description

BnaA02g27360DBnaA02g27360D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IID1]

Coordinates

chrLK032853:+:88462..89945

Molecular Weight (calculated)

18340.3 Da

IEP (calculated)

9.617

GRAVY (calculated)

-0.039

Length

163 amino acids

Sequence
(BLAST)

001: MKKYFRFKPE FSTRYRFSRS SLTKQNHLFA KVFWGLHCFA SILRDLCLPG FFFLGILFRG LCSNMSGRKE TVLDLAKFVD KGVQVKLTGG RQVTGTLKGY
101: DQLLNLVLDA AVESVRDHDD PLTTTDQTRR LGLIVCRGTA VMLVSPTDGT EEIANPFVQP EAV

Best Arabidopsis Sequence Match ( AT2G03870.1 )
(BLAST)

1: MSGRKETVLD LAKFVDKGVQ VKLTGGRQVT GTLKGYDQLL NLVLDEAVEF VRDHDDPLKT TDQTRRLGLI VCRGTAVMLV SPTDGTEEIA NPFVTAEAV

Arabidopsis Description

LSM7LSM7 [Source:UniProtKB/TrEMBL;Acc:A0A178VPR3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.