CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 3
mitochondrion 2
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
EpiLoc:	cytosol
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra032135.1-P	Field mustard	cytosol	100.0	100.0
CDY01024	Canola	cytosol	98.75	100.0
CDY08518	Canola	cytosol	98.75	100.0
CDY23693	Canola	cytosol	98.75	100.0
CDY65184	Canola	cytosol	100.0	100.0
AT2G23930.1	Thale cress	cytosol	97.5	97.5
VIT_08s0007g03130.t01	Wine grape	cytosol	92.5	92.5
KRG96200	Soybean	nucleus	91.25	92.41
KRH67942	Soybean	cytosol	91.25	92.41
KRH28926	Soybean	nucleus	88.75	89.87
Zm00001d029483_P001	Maize	cytosol	88.75	88.75
GSMUA_AchrUn_...	Banana	cytosol	87.5	88.61
EER94701	Sorghum	cytosol	88.75	87.65
Zm00001d047271_P002	Maize	cytosol	87.5	87.5
Os03t0410900-01	Rice	nucleus	87.5	87.5
PGSC0003DMT400060122	Potato	cytosol	86.25	86.25
Solyc05g055260.2.1	Tomato	nucleus	86.25	86.25
GSMUA_Achr5P23160_001	Banana	cytosol	85.0	86.08
GSMUA_Achr3P20170_001	Banana	cytosol	85.0	86.08
Os07t0608700-02	Rice	cytosol	85.0	85.0
Solyc11g006820.1.1	Tomato	cytosol, nucleus	85.0	83.95
EER99690	Sorghum	cytosol	83.75	83.75
PGSC0003DMT400061605	Potato	cytosol	83.75	82.72
TraesCS2A01G171800.1	Wheat	cytosol	80.0	81.01
TraesCS2B01G198200.1	Wheat	cytosol	80.0	79.01
HORVU2Hr1G031890.2	Barley	cytosol	86.25	78.41
Zm00001d037942_P001	Maize	cytosol, nucleus, plastid	51.25	35.65
Zm00001d052555_P001	Maize	cytosol	51.25	35.65
CDY45725	Canola	cytosol	35.0	23.33
Zm00001d028673_P001	Maize	extracellular	50.0	22.86
CDY49697	Canola	mitochondrion	35.0	17.18
CDX83524	Canola	golgi	33.75	10.55
CDY48065	Canola	golgi	33.75	8.06

Protein Annotations

MapMan:16.4.2.7	Gene3D:2.30.30.100	GO:A0A078JES5	UniProt:A0A078JES5	EnsemblPlants:CDY39683	ProteinID:CDY39683
ProteinID:CDY39683.1	ProteinID:CDY65184.1	GO:GO:0000387	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005681	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016043	GO:GO:0030529	EnsemblPlantsGene:GSBRNA2T00068270001	InterPro:LSM_dom_euk/arc	InterPro:LSM_dom_sf	PFAM:PF01423
PIRSF:PIRSF037188	PANTHER:PTHR10553	PANTHER:PTHR10553:SF15	SMART:SM00651	SUPFAM:SSF50182	InterPro:Sm_G
UniParc:UPI00019AAA0E	:	:	:	:	:

Description

BnaA04g14000DBnaA04g14000D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JES5]

Coordinates

chrLK032454:+:185597..186496

Molecular Weight (calculated)

8838.8 Da

IEP (calculated)

9.134

GRAVY (calculated)

-0.280

Length

80 amino acids

Sequence
(BLAST)

1: MSRSGQPPDL KKYMDKKLQI KLNANRMVVG TLRGFDQFMN LVVDNTVEVN GDDKTDIGMV VIRGNSIVTV EALEPVGRSS

Best Arabidopsis Sequence Match ( AT3G11500.1 )
(BLAST)

1: MSRSGQPPDL KKYMDKKLQI KLNANRMVVG TLRGFDQFMN LVVDNTVEVN GDDKTDIGMV VIRGNSIVTV EALEPVGRS

Arabidopsis Description

Putative small nuclear ribonucleoprotein polypeptide G [Source:UniProtKB/TrEMBL;Acc:Q9CAX7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.