Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d037942_P001 | Maize | cytosol, nucleus, plastid | 98.26 | 98.26 |
| Zm00001d047271_P002 | Maize | cytosol | 42.61 | 61.25 |
| EER94701 | Sorghum | cytosol | 41.74 | 59.26 |
| Zm00001d029483_P001 | Maize | cytosol | 40.0 | 57.5 |
| Os03t0410900-01 | Rice | nucleus | 39.13 | 56.25 |
| Solyc11g006820.1.1 | Tomato | cytosol, nucleus | 39.13 | 55.56 |
| VIT_08s0007g03130.t01 | Wine grape | cytosol | 38.26 | 55.0 |
| Solyc05g055260.2.1 | Tomato | nucleus | 38.26 | 55.0 |
| PGSC0003DMT400060122 | Potato | cytosol | 38.26 | 55.0 |
| GSMUA_AchrUn_... | Banana | cytosol | 37.39 | 54.43 |
| PGSC0003DMT400061605 | Potato | cytosol | 38.26 | 54.32 |
| GSMUA_Achr5P23160_001 | Banana | cytosol | 36.52 | 53.16 |
| AT2G23930.1 | Thale cress | cytosol | 36.52 | 52.5 |
| KRG96200 | Soybean | nucleus | 35.65 | 51.9 |
| KRH67942 | Soybean | cytosol | 35.65 | 51.9 |
| GSMUA_Achr3P20170_001 | Banana | cytosol | 35.65 | 51.9 |
| CDY23693 | Canola | cytosol | 35.65 | 51.9 |
| CDY08518 | Canola | cytosol | 35.65 | 51.9 |
| CDY01024 | Canola | cytosol | 35.65 | 51.9 |
| Bra034834.1-P | Field mustard | cytosol | 35.65 | 51.9 |
| Bra034726.1-P | Field mustard | cytosol | 35.65 | 51.9 |
| Bra002044.1-P | Field mustard | cytosol | 35.65 | 51.9 |
| AT3G11500.2 | Thale cress | cytosol | 35.65 | 51.9 |
| CDY65184 | Canola | cytosol | 35.65 | 51.25 |
| CDY39683 | Canola | cytosol | 35.65 | 51.25 |
| Bra032135.1-P | Field mustard | cytosol | 35.65 | 51.25 |
| KRH28926 | Soybean | nucleus | 33.91 | 49.37 |
| Zm00001d028673_P001 | Maize | extracellular | 69.57 | 45.71 |
| Zm00001d002155_P001 | Maize | cytosol | 20.87 | 24.49 |
| Zm00001d026392_P002 | Maize | mitochondrion | 21.74 | 17.01 |
Protein Annotations
| EnsemblPlants:Zm00001d052555_P001 | EnsemblPlants:Zm00001d052555_T001 | EnsemblPlantsGene:Zm00001d052555 | Gene3D:2.30.30.100 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0019013 | GO:GO:0030529 | InterPro:LSM_dom_euk/arc | InterPro:LSM_dom_sf | PANTHER:PTHR10553 |
| PANTHER:PTHR10553:SF15 | PFAM:PF01423 | ProteinID:AQK57418.1 | SMART:SM00651 | SUPFAM:SSF50182 | UniParc:UPI000844C104 |
| UniProt:A0A1D6QHS1 | MapMan:16.4.2.7 | : | : | : | : |
Description
Probable small nuclear ribonucleoprotein G
Coordinates
chr4:-:192888200..192891568
Molecular Weight (calculated)
12838.4 Da
IEP (calculated)
5.675
GRAVY (calculated)
0.008
Length
115 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAAGDETKR CLRKFDANSD EQISQSGLVA LFEDQYFAIE FMSGLYVQSL HISSVKLNAN RLVIGTLRGF DQFMNLVINN TVDVSGNYNT HNGMVFIRGN
101: RVVMIEALEL ISKSQ
101: RVVMIEALEL ISKSQ
1: MSRSGQPPDL KKYMDKKLQI KLNANRMVTG TLRGFDQFMN LVVDNTVEVN GNDKTDIGMV VIRGNSIVTV EALEPVGRSS
Arabidopsis Description
SNRNP-GProbable small nuclear ribonucleoprotein G [Source:UniProtKB/Swiss-Prot;Acc:O82221]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.