CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, extracellular, cytosol

Predictor Summary:

plastid 1
nucleus 2
cytosol 1
extracellular 2
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular, plasma membrane
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	plastid
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	extracellular
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH27506	cytosol, nucleus
KRH42700	cytosol, nucleus
KRH58808	cytosol, nucleus

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G48870.1	KRH27506	AT2G03870.2	23221597
AT5G48870.1	KRH42700	AT2G03870.2	23221597
AT5G48870.1	KRH58808	AT2G03870.2	23221597
AT5G48870.1	KRH27506	AT2G03870.2	23221597
AT5G48870.1	KRH42700	AT2G03870.2	23221597
AT5G48870.1	KRH58808	AT2G03870.2	23221597

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH58439	Soybean	cytosol	76.24	88.51
VIT_05s0051g00850.t01	Wine grape	cytosol	74.26	86.21
AT5G48870.1	Thale cress	cytosol	74.26	85.23
Solyc09g091500.2.1	Tomato	nucleus	74.26	85.23
PGSC0003DMT400076269	Potato	mitochondrion	74.26	85.23
GSMUA_Achr8P00430_001	Banana	cytosol	73.27	85.06
TraesCS1D01G242900.1	Wheat	cytosol, extracellular, nucleus	74.26	84.27
TraesCS1B01G254400.1	Wheat	cytosol, extracellular, nucleus	74.26	84.27
Os05t0389300-01	Rice	cytosol, extracellular, nucleus	74.26	84.27
Zm00001d038088_P001	Maize	cytosol, extracellular, nucleus	73.27	84.09
Zm00001d010461_P001	Maize	cytosol, extracellular, nucleus	73.27	84.09
TraesCS1A01G242900.1	Wheat	cytosol, extracellular, nucleus	73.27	84.09
EES19467	Sorghum	cytosol, extracellular, nucleus	73.27	84.09
CDY33941	Canola	cytosol	70.3	79.78
CDY19934	Canola	cytosol	70.3	79.78
CDY05658	Canola	cytosol	70.3	79.78
CDY00041	Canola	cytosol	70.3	79.78
Bra020674.1-P	Field mustard	cytosol	70.3	79.78
Bra036157.1-P	Field mustard	cytosol	69.31	78.65
HORVU1Hr1G056490.1	Barley	plastid	74.26	53.19

Protein Annotations

EntrezGene:100306359	MapMan:16.4.3.5	Gene3D:2.30.30.100	EMBL:ACUP02004798	EnsemblPlantsGene:GLYMA_08G082700	GO:GO:0000398
GO:GO:0000956	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005688	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0030529
GO:GO:0046540	GO:GO:1990726	UniProt:I1KRE2	EnsemblPlants:KRH42315	ProteinID:KRH42315	ProteinID:KRH42315.1
InterPro:LSM_dom_euk/arc	InterPro:LSM_dom_sf	InterPro:LSm5	PFAM:PF01423	PANTHER:PTHR20971	SMART:SM00651
SUPFAM:SSF50182	TMHMM:TMhelix	UniParc:UPI00023C6285	:	:	:

Description

hypothetical protein

Coordinates

chr8:-:6265496..6267482

Molecular Weight (calculated)

11399.1 Da

IEP (calculated)

4.686

GRAVY (calculated)

0.483

Length

101 amino acids

Sequence
(BLAST)

001: MANNPSQLLP SELIDRCIGS KIWVIMKGDK ELVGTLRGFD VYVNMVLEDV TEYEITAEGR RITKLDQILL NGNNIAILFL ASVILILAII WLHAVGPWWF
101: S

Best Arabidopsis Sequence Match ( AT5G48870.1 )
(BLAST)

1: MANNPSQLLP SELIDRCIGS KIWVIMKGDK ELVGILKGFD VYVNMVLEDV TEYEITAEGR RVTKLDQILL NGNNIAILVP GGSPEDGE

Arabidopsis Description

LSM5SAD1 [Source:UniProtKB/TrEMBL;Acc:A0A178USD1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.