Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra025138.1-P | cytosol, nucleus |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G48870.1 | Bra025138.1-P | AT2G03870.2 | 23221597 |
| AT5G48870.1 | Bra025138.1-P | AT2G03870.2 | 23221597 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra020674.1-P | Field mustard | cytosol | 98.88 | 98.88 |
| CDY19934 | Canola | cytosol | 98.88 | 98.88 |
| AT5G48870.1 | Thale cress | cytosol | 89.89 | 90.91 |
| Solyc09g091500.2.1 | Tomato | nucleus | 88.76 | 89.77 |
| PGSC0003DMT400076269 | Potato | mitochondrion | 88.76 | 89.77 |
| Zm00001d038088_P001 | Maize | cytosol, extracellular, nucleus | 86.52 | 87.5 |
| Zm00001d010461_P001 | Maize | cytosol, extracellular, nucleus | 86.52 | 87.5 |
| EES19467 | Sorghum | cytosol, extracellular, nucleus | 86.52 | 87.5 |
| VIT_05s0051g00850.t01 | Wine grape | cytosol | 85.39 | 87.36 |
| Os05t0389300-01 | Rice | cytosol, extracellular, nucleus | 86.52 | 86.52 |
| KRH58439 | Soybean | cytosol | 84.27 | 86.21 |
| GSMUA_Achr8P00430_001 | Banana | cytosol | 84.27 | 86.21 |
| TraesCS1B01G254400.1 | Wheat | cytosol, extracellular, nucleus | 85.39 | 85.39 |
| TraesCS1D01G242900.1 | Wheat | cytosol, extracellular, nucleus | 85.39 | 85.39 |
| TraesCS1A01G242900.1 | Wheat | cytosol, extracellular, nucleus | 84.27 | 85.23 |
| KRH42315 | Soybean | cytosol, extracellular, plasma membrane | 78.65 | 69.31 |
| HORVU1Hr1G056490.1 | Barley | plastid | 85.39 | 53.9 |
Protein Annotations
| EnsemblPlants:Bra036157.1 | EnsemblPlants:Bra036157.1-P | EnsemblPlantsGene:Bra036157 | Gene3D:2.30.30.100 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0030529 | InterPro:LSM_dom_euk/arc | InterPro:LSM_dom_sf | InterPro:LSm5 | PANTHER:PTHR20971 |
| PFAM:PF01423 | SMART:SM00651 | SUPFAM:SSF50182 | UniParc:UPI0002541EC3 | UniProt:M4F503 | MapMan:16.4.3.5 |
Description
AT5G48870 (E=9e-041) SAD1 | SAD1 (SUPERSENSITIVE TO ABA AND DROUGHT 1); RNA binding
Coordinates
chrA09:+:2413584..2414140
Molecular Weight (calculated)
9674.7 Da
IEP (calculated)
4.168
GRAVY (calculated)
0.037
Length
89 amino acids
Sequence
(BLAST)
(BLAST)
1: MASNNPSQLL PSELIDRCIG SKIRVIMKGD KELVGVLKGF DVYVNMVLED VTEYEITSEG SRVTKLDQIL LNGNNIAILV PGGAPEDVE
1: MANNPSQLLP SELIDRCIGS KIWVIMKGDK ELVGILKGFD VYVNMVLEDV TEYEITAEGR RVTKLDQILL NGNNIAILVP GGSPEDGE
Arabidopsis Description
LSM5SAD1 [Source:UniProtKB/TrEMBL;Acc:A0A178USD1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.