Factsheet for AT5G48870.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

endoplasmic reticulum 1
golgi 1
extracellular 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, endoplasmic reticulum, extracellular, golgi
BaCelLo:	endoplasmic reticulum, extracellular, golgi
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH58439	Soybean	cytosol	92.05	93.1
Bra020674.1-P	Field mustard	cytosol	92.05	91.01
CDY00041	Canola	cytosol	92.05	91.01
CDY05658	Canola	cytosol	92.05	91.01
CDY19934	Canola	cytosol	92.05	91.01
CDY33941	Canola	cytosol	92.05	91.01
GSMUA_Achr8P00430_001	Banana	cytosol	89.77	90.8
Bra036157.1-P	Field mustard	cytosol	90.91	89.89
EES19467	Sorghum	cytosol, extracellular, nucleus	89.77	89.77
PGSC0003DMT400076269	Potato	mitochondrion	89.77	89.77
Solyc09g091500.2.1	Tomato	nucleus	89.77	89.77
Zm00001d010461_P001	Maize	cytosol, extracellular, nucleus	89.77	89.77
Zm00001d038088_P001	Maize	cytosol, extracellular, nucleus	89.77	89.77
VIT_05s0051g00850.t01	Wine grape	cytosol	88.64	89.66
Os05t0389300-01	Rice	cytosol, extracellular, nucleus	89.77	88.76
TraesCS1B01G254400.1	Wheat	cytosol, extracellular, nucleus	89.77	88.76
TraesCS1D01G242900.1	Wheat	cytosol, extracellular, nucleus	89.77	88.76
TraesCS1A01G242900.1	Wheat	cytosol, extracellular, nucleus	88.64	88.64
KRH42315	Soybean	cytosol, extracellular, plasma membrane	85.23	74.26
HORVU1Hr1G056490.1	Barley	plastid	89.77	56.03

Protein Annotations

MapMan:16.4.3.5	Gene3D:2.30.30.100	EntrezGene:834945	UniProt:A0A178USD1	ProteinID:AED95735.1	ProteinID:AFJ05005.1
EMBL:AK229657	ArrayExpress:AT5G48870	EnsemblPlantsGene:AT5G48870	RefSeq:AT5G48870	TAIR:AT5G48870	RefSeq:AT5G48870-TAIR-G
EnsemblPlants:AT5G48870.1	TAIR:AT5G48870.1	EMBL:AY034896	Unigene:At.49146	ProteinID:BAB09440.1	EMBL:BT025700
GO:GO:0000398	GO:GO:0000956	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005681	GO:GO:0005688
GO:GO:0005737	GO:GO:0006139	GO:GO:0006397	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152
GO:GO:0008380	GO:GO:0009056	GO:GO:0009414	GO:GO:0009628	GO:GO:0009719	GO:GO:0009737
GO:GO:0009987	GO:GO:0030529	GO:GO:0046540	GO:GO:1990726	InterPro:LSM_dom_euk/arc	InterPro:LSM_dom_sf
InterPro:LSm5	RefSeq:NP_199698.1	ProteinID:OAO96054.1	PFAM:PF01423	PO:PO:0000013	PO:PO:0000037
PO:PO:0000084	PO:PO:0000230	PO:PO:0000293	PO:PO:0001054	PO:PO:0001078	PO:PO:0001081
PO:PO:0001185	PO:PO:0004507	PO:PO:0007064	PO:PO:0007095	PO:PO:0007098	PO:PO:0007103
PO:PO:0007115	PO:PO:0007123	PO:PO:0007611	PO:PO:0007616	PO:PO:0008019	PO:PO:0009005
PO:PO:0009006	PO:PO:0009009	PO:PO:0009010	PO:PO:0009025	PO:PO:0009029	PO:PO:0009030
PO:PO:0009031	PO:PO:0009032	PO:PO:0009046	PO:PO:0009047	PO:PO:0009052	PO:PO:0020030
PO:PO:0020038	PO:PO:0020100	PO:PO:0020137	PO:PO:0025022	PO:PO:0025195	PO:PO:0025281
PANTHER:PTHR20971	UniProt:Q9FKB0	Symbol:SAD1	SMART:SM00651	SUPFAM:SSF50182	UniParc:UPI000009CC4B

Description

LSM5SAD1 [Source:UniProtKB/TrEMBL;Acc:A0A178USD1]

Coordinates

chr5:+:19813346..19814554

Molecular Weight (calculated)

9658.7 Da

IEP (calculated)

4.168

GRAVY (calculated)

-0.003

Length

88 amino acids

Sequence
(BLAST)

1: MANNPSQLLP SELIDRCIGS KIWVIMKGDK ELVGILKGFD VYVNMVLEDV TEYEITAEGR RVTKLDQILL NGNNIAILVP GGSPEDGE

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.