Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G242900.1 | Wheat | cytosol, extracellular, nucleus | 63.12 | 100.0 |
| TraesCS1B01G254400.1 | Wheat | cytosol, extracellular, nucleus | 63.12 | 100.0 |
| TraesCS1A01G242900.1 | Wheat | cytosol, extracellular, nucleus | 62.41 | 100.0 |
| Os05t0389300-01 | Rice | cytosol, extracellular, nucleus | 62.41 | 98.88 |
| Zm00001d038088_P001 | Maize | cytosol, extracellular, nucleus | 61.7 | 98.86 |
| Zm00001d010461_P001 | Maize | cytosol, extracellular, nucleus | 61.7 | 98.86 |
| EES19467 | Sorghum | cytosol, extracellular, nucleus | 61.7 | 98.86 |
| Solyc09g091500.2.1 | Tomato | nucleus | 58.87 | 94.32 |
| PGSC0003DMT400076269 | Potato | mitochondrion | 58.87 | 94.32 |
| KRH58439 | Soybean | cytosol | 56.03 | 90.8 |
| AT5G48870.1 | Thale cress | cytosol | 56.03 | 89.77 |
| GSMUA_Achr8P00430_001 | Banana | cytosol | 55.32 | 89.66 |
| VIT_05s0051g00850.t01 | Wine grape | cytosol | 55.32 | 89.66 |
| CDY33941 | Canola | cytosol | 54.61 | 86.52 |
| CDY19934 | Canola | cytosol | 54.61 | 86.52 |
| CDY05658 | Canola | cytosol | 54.61 | 86.52 |
| CDY00041 | Canola | cytosol | 54.61 | 86.52 |
| Bra020674.1-P | Field mustard | cytosol | 54.61 | 86.52 |
| Bra036157.1-P | Field mustard | cytosol | 53.9 | 85.39 |
| KRH42315 | Soybean | cytosol, extracellular, plasma membrane | 53.19 | 74.26 |
Protein Annotations
| EnsemblPlants:HORVU1Hr1G056490.1 | EnsemblPlantsGene:HORVU1Hr1G056490 | Gene3D:2.30.30.100 | InterPro:LSM_dom_euk/arc | InterPro:LSM_dom_sf | InterPro:LSm5 |
| PANTHER:PTHR20971 | PFAM:PF01423 | SEG:seg | SMART:SM00651 | SUPFAM:SSF50182 | UniParc:UPI000B4654C7 |
| UniProt:A0A287FQN7 | MapMan:16.4.3.5 | : | : | : | : |
Description
No Description!
Coordinates
chrchr1H:+:414235956..414238236
Molecular Weight (calculated)
15171.2 Da
IEP (calculated)
8.486
GRAVY (calculated)
-0.295
Length
141 amino acids
Sequence
(BLAST)
(BLAST)
001: GTIDGKSPPQ RRSKRPPNPL HLRRRSSPSA RAPAAPFASP PTCLDFSAVG GAMSQNNPSQ LLPSELIDRC IGSKIWVIMK GDKELVGTLC GFDVYVNMVL
101: EDVTEYEYTA EGRRITKLDQ ILLNGNNIAI LVPGGSPPDA A
101: EDVTEYEYTA EGRRITKLDQ ILLNGNNIAI LVPGGSPPDA A
1: MANNPSQLLP SELIDRCIGS KIWVIMKGDK ELVGILKGFD VYVNMVLEDV TEYEITAEGR RVTKLDQILL NGNNIAILVP GGSPEDGE
Arabidopsis Description
LSM5SAD1 [Source:UniProtKB/TrEMBL;Acc:A0A178USD1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.