Factsheet for GSMUA_Achr8P00430_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...	cytosol, nucleus
GSMUA_Achr7P02070_001	cytosol, nucleus

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G48870.1	GSMUA_Achr10P...	AT2G03870.2	23221597
AT5G48870.1	GSMUA_Achr7P02070_001	AT2G03870.2	23221597
AT5G48870.1	GSMUA_Achr10P...	AT2G03870.2	23221597
AT5G48870.1	GSMUA_Achr7P02070_001	AT2G03870.2	23221597

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_05s0051g00850.t01	Wine grape	cytosol	95.4	95.4
KRH58439	Soybean	cytosol	91.95	91.95
Solyc09g091500.2.1	Tomato	nucleus	91.95	90.91
PGSC0003DMT400076269	Potato	mitochondrion	91.95	90.91
AT5G48870.1	Thale cress	cytosol	90.8	89.77
Zm00001d038088_P001	Maize	cytosol, extracellular, nucleus	89.66	88.64
Zm00001d010461_P001	Maize	cytosol, extracellular, nucleus	89.66	88.64
EES19467	Sorghum	cytosol, extracellular, nucleus	89.66	88.64
Os05t0389300-01	Rice	cytosol, extracellular, nucleus	89.66	87.64
TraesCS1B01G254400.1	Wheat	cytosol, extracellular, nucleus	89.66	87.64
TraesCS1D01G242900.1	Wheat	cytosol, extracellular, nucleus	89.66	87.64
TraesCS1A01G242900.1	Wheat	cytosol, extracellular, nucleus	88.51	87.5
CDY33941	Canola	cytosol	87.36	85.39
CDY19934	Canola	cytosol	87.36	85.39
CDY05658	Canola	cytosol	87.36	85.39
CDY00041	Canola	cytosol	87.36	85.39
Bra020674.1-P	Field mustard	cytosol	87.36	85.39
Bra036157.1-P	Field mustard	cytosol	86.21	84.27
KRH42315	Soybean	cytosol, extracellular, plasma membrane	85.06	73.27
HORVU1Hr1G056490.1	Barley	plastid	89.66	55.32

Protein Annotations

MapMan:16.4.3.5	Gene3D:2.30.30.100	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006950
GO:GO:0008150	GO:GO:0009414	GO:GO:0009628	GO:GO:0009719	GO:GO:0009737	GO:GO:0030529
EnsemblPlantsGene:GSMUA_Achr8G00430_001	EnsemblPlants:GSMUA_Achr8P00430_001	EnsemblPlants:GSMUA_Achr8T00430_001	InterPro:LSM_dom_euk/arc	InterPro:LSM_dom_sf	InterPro:LSm5
UniProt:M0TLE5	PFAM:PF01423	PANTHER:PTHR20971	SMART:SM00651	SUPFAM:SSF50182	UniParc:UPI000294FAA6

Description

U6 snRNA-associated Sm-like protein LSm5 [Source:GMGC_GENE;Acc:GSMUA_Achr8G00430_001]

Coordinates

chr8:+:344515..349562

Molecular Weight (calculated)

9594.7 Da

IEP (calculated)

4.386

GRAVY (calculated)

-0.030

Length

87 amino acids

Sequence
(BLAST)

1: MSHNPSQLLP AELIDRCIGS KIWVIMKGDK ELVGTLKGFD VYVNMVLEDV TEYEITAEGR RITKLDQILL NGNNIAILVP GGSPDPE

Best Arabidopsis Sequence Match ( AT5G48870.1 )
(BLAST)

1: MANNPSQLLP SELIDRCIGS KIWVIMKGDK ELVGILKGFD VYVNMVLEDV TEYEITAEGR RVTKLDQILL NGNNIAILVP GGSPEDGE

Arabidopsis Description

LSM5SAD1 [Source:UniProtKB/TrEMBL;Acc:A0A178USD1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.