Subcellular Localization
min:
: max
Winner_takes_all: extracellular, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- extracellular 2
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS1D01G062600.1 | cytosol, nucleus |
| TraesCS2A01G528800.1 | cytosol, nucleus |
| TraesCS2B01G559200.1 | cytosol, nucleus |
| TraesCS2D01G531700.1 | cytosol, nucleus |
| TraesCS7A01G368900.1 | cytosol, nucleus |
| TraesCS7B01G259600.1 | cytosol, nucleus |
| TraesCSU01G104500.2 | cytosol, nucleus |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1B01G254400.1 | Wheat | cytosol, extracellular, nucleus | 100.0 | 100.0 |
| TraesCS1A01G242900.1 | Wheat | cytosol, extracellular, nucleus | 98.88 | 100.0 |
| Os05t0389300-01 | Rice | cytosol, extracellular, nucleus | 98.88 | 98.88 |
| Zm00001d038088_P001 | Maize | cytosol, extracellular, nucleus | 97.75 | 98.86 |
| Zm00001d010461_P001 | Maize | cytosol, extracellular, nucleus | 97.75 | 98.86 |
| EES19467 | Sorghum | cytosol, extracellular, nucleus | 97.75 | 98.86 |
| Solyc09g091500.2.1 | Tomato | nucleus | 93.26 | 94.32 |
| PGSC0003DMT400076269 | Potato | mitochondrion | 93.26 | 94.32 |
| KRH58439 | Soybean | cytosol | 88.76 | 90.8 |
| AT5G48870.1 | Thale cress | cytosol | 88.76 | 89.77 |
| VIT_05s0051g00850.t01 | Wine grape | cytosol | 87.64 | 89.66 |
| GSMUA_Achr8P00430_001 | Banana | cytosol | 87.64 | 89.66 |
| Bra020674.1-P | Field mustard | cytosol | 86.52 | 86.52 |
| CDY33941 | Canola | cytosol | 86.52 | 86.52 |
| CDY19934 | Canola | cytosol | 86.52 | 86.52 |
| CDY05658 | Canola | cytosol | 86.52 | 86.52 |
| CDY00041 | Canola | cytosol | 86.52 | 86.52 |
| Bra036157.1-P | Field mustard | cytosol | 85.39 | 85.39 |
| KRH42315 | Soybean | cytosol, extracellular, plasma membrane | 84.27 | 74.26 |
| HORVU1Hr1G056490.1 | Barley | plastid | 100.0 | 63.12 |
Protein Annotations
| EnsemblPlants:TraesCS1D01G242900.1 | EnsemblPlantsGene:TraesCS1D01G242900 | Gene3D:2.30.30.100 | InterPro:LSM_dom_euk/arc | InterPro:LSM_dom_sf | InterPro:LSm5 |
| PANTHER:PTHR20971 | PFAM:PF01423 | SMART:SM00651 | SUPFAM:SSF50182 | TIGR:cd01732 | MapMan:16.4.3.5 |
Description
No Description!
Coordinates
chr1D:-:333003643..333005407
Molecular Weight (calculated)
9753.8 Da
IEP (calculated)
4.180
GRAVY (calculated)
-0.015
Length
89 amino acids
Sequence
(BLAST)
(BLAST)
1: MSQNNPSQLL PSELIDRCIG SKIWVIMKGD KELVGTLCGF DVYVNMVLED VTEYEYTAEG RRITKLDQIL LNGNNIAILV PGGSPPDAA
1: MANNPSQLLP SELIDRCIGS KIWVIMKGDK ELVGILKGFD VYVNMVLEDV TEYEITAEGR RVTKLDQILL NGNNIAILVP GGSPEDGE
Arabidopsis Description
LSM5SAD1 [Source:UniProtKB/TrEMBL;Acc:A0A178USD1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.