Factsheet for Zm00001d010461_P001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, nucleus, cytosol

Predictor Summary:

extracellular 2
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular, nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	extracellular
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d002155_P001	cytosol, nucleus
Zm00001d026392_P002	cytosol, nucleus

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G48870.1	Zm00001d002155_P001	AT2G03870.2	23221597
AT5G48870.1	Zm00001d026392_P002	AT2G03870.2	23221597
AT5G48870.1	Zm00001d002155_P001	AT2G03870.2	23221597
AT5G48870.1	Zm00001d026392_P002	AT2G03870.2	23221597

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d038088_P001	Maize	cytosol, extracellular, nucleus	100.0	100.0
EES19467	Sorghum	cytosol, extracellular, nucleus	100.0	100.0
Os05t0389300-01	Rice	cytosol, extracellular, nucleus	100.0	98.88
TraesCS1D01G242900.1	Wheat	cytosol, extracellular, nucleus	98.86	97.75
TraesCS1B01G254400.1	Wheat	cytosol, extracellular, nucleus	98.86	97.75
TraesCS1A01G242900.1	Wheat	cytosol, extracellular, nucleus	97.73	97.73
Solyc09g091500.2.1	Tomato	nucleus	94.32	94.32
PGSC0003DMT400076269	Potato	mitochondrion	94.32	94.32
KRH58439	Soybean	cytosol	89.77	90.8
AT5G48870.1	Thale cress	cytosol	89.77	89.77
VIT_05s0051g00850.t01	Wine grape	cytosol	88.64	89.66
GSMUA_Achr8P00430_001	Banana	cytosol	88.64	89.66
Bra020674.1-P	Field mustard	cytosol	88.64	87.64
CDY33941	Canola	cytosol	88.64	87.64
CDY19934	Canola	cytosol	88.64	87.64
CDY05658	Canola	cytosol	88.64	87.64
CDY00041	Canola	cytosol	88.64	87.64
Bra036157.1-P	Field mustard	cytosol	87.5	86.52
KRH42315	Soybean	cytosol, extracellular, plasma membrane	84.09	73.27
HORVU1Hr1G056490.1	Barley	plastid	98.86	61.7

Protein Annotations

EntrezGene:100283319	EntrezGene:100286213	MapMan:16.4.3.5	Gene3D:2.30.30.100	ProteinID:AQK85590.1	ProteinID:AQK85591.1
ProteinID:AQK94098.1	UniProt:B4FLA3	EMBL:BT037891	EMBL:EU952746	EMBL:EU954247	EMBL:EU964285
EMBL:EU966688	EMBL:EU976172	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0030529
InterPro:LSM_dom_euk/arc	InterPro:LSM_dom_sf	InterPro:LSm5	PFAM:PF01423	PANTHER:PTHR20971	SMART:SM00651
SUPFAM:SSF50182	UniParc:UPI00017B6AAE	EnsemblPlantsGene:Zm00001d010461	EnsemblPlants:Zm00001d010461_P001	EnsemblPlants:Zm00001d010461_T001	:

Description

Sm-like protein LSM5

Coordinates

chr8:-:116331820..116334299

Molecular Weight (calculated)

9710.8 Da

IEP (calculated)

4.180

GRAVY (calculated)

-0.008

Length

88 amino acids

Sequence
(BLAST)

1: MSQNNPSQLL PSELIDRCIG SKIWVIMKGD KELVGTLCGF DVYVNMVLED VTEYEYTAEG RRITKLDQIL LNGNNIAILV PGGSPPDV

Best Arabidopsis Sequence Match ( AT5G48870.1 )
(BLAST)

1: MANNPSQLLP SELIDRCIGS KIWVIMKGDK ELVGILKGFD VYVNMVLEDV TEYEITAEGR RVTKLDQILL NGNNIAILVP GGSPEDGE

Arabidopsis Description

LSM5SAD1 [Source:UniProtKB/TrEMBL;Acc:A0A178USD1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.