CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX83524	cytosol, nucleus
CDY45725	cytosol, nucleus
CDY48065	cytosol, nucleus
CDY49697	cytosol, nucleus

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G48870.1	CDX83524	AT2G03870.2	23221597
AT5G48870.1	CDY45725	AT2G03870.2	23221597
AT5G48870.1	CDY48065	AT2G03870.2	23221597
AT5G48870.1	CDY49697	AT2G03870.2	23221597
AT5G48870.1	CDX83524	AT2G03870.2	23221597
AT5G48870.1	CDY45725	AT2G03870.2	23221597
AT5G48870.1	CDY48065	AT2G03870.2	23221597
AT5G48870.1	CDY49697	AT2G03870.2	23221597

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra020674.1-P	Field mustard	cytosol	100.0	100.0
CDY00041	Canola	cytosol	100.0	100.0
CDY05658	Canola	cytosol	100.0	100.0
CDY19934	Canola	cytosol	100.0	100.0
AT5G48870.1	Thale cress	cytosol	91.01	92.05
Zm00001d038088_P001	Maize	cytosol, extracellular, nucleus	87.64	88.64
Zm00001d010461_P001	Maize	cytosol, extracellular, nucleus	87.64	88.64
Solyc09g091500.2.1	Tomato	nucleus	87.64	88.64
PGSC0003DMT400076269	Potato	mitochondrion	87.64	88.64
EES19467	Sorghum	cytosol, extracellular, nucleus	87.64	88.64
Os05t0389300-01	Rice	cytosol, extracellular, nucleus	87.64	87.64
KRH58439	Soybean	cytosol	85.39	87.36
GSMUA_Achr8P00430_001	Banana	cytosol	85.39	87.36
TraesCS1B01G254400.1	Wheat	cytosol, extracellular, nucleus	86.52	86.52
TraesCS1D01G242900.1	Wheat	cytosol, extracellular, nucleus	86.52	86.52
TraesCS1A01G242900.1	Wheat	cytosol, extracellular, nucleus	85.39	86.36
VIT_05s0051g00850.t01	Wine grape	cytosol	84.27	86.21
KRH42315	Soybean	cytosol, extracellular, plasma membrane	79.78	70.3
HORVU1Hr1G056490.1	Barley	plastid	86.52	54.61

Protein Annotations

EnsemblPlants:CDY33941	EnsemblPlantsGene:GSBRNA2T00055455001	Gene3D:2.30.30.100	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0030529	InterPro:LSM_dom_euk/arc	InterPro:LSM_dom_sf	InterPro:LSm5	PANTHER:PTHR20971	PFAM:PF01423
ProteinID:CDY19934.1	ProteinID:CDY33941	ProteinID:CDY33941.1	SMART:SM00651	SUPFAM:SSF50182	UniParc:UPI000151E3C1
UniProt:A0A078H7W2	MapMan:16.4.3.5	:	:	:	:

Description

BnaA02g30460DBnaA02g30460D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H7W2]

Coordinates

chrLK032324:-:385091..386116

Molecular Weight (calculated)

9658.7 Da

IEP (calculated)

4.168

GRAVY (calculated)

0.066

Length

89 amino acids

Sequence
(BLAST)

1: MASNNPSQLL PSELIDRCIG SKIRVIMKGD KELVGVLKGF DVYVNMVLED VTEYEITAEG SRVTKLDQIL LNGNNIAILV PGGAPEDVE

Best Arabidopsis Sequence Match ( AT5G48870.1 )
(BLAST)

1: MANNPSQLLP SELIDRCIGS KIWVIMKGDK ELVGILKGFD VYVNMVLEDV TEYEITAEGR RVTKLDQILL NGNNIAILVP GGSPEDGE

Arabidopsis Description

LSM5SAD1 [Source:UniProtKB/TrEMBL;Acc:A0A178USD1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.