Factsheet for PGSC0003DMT400076269

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

extracellular 2
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	extracellular
YLoc:	nucleus

mitochondrion: 24351685

msms PMID: 24351685 doi

F Salvato, JF Havelund, M Chen, RS Rao, A Rogowska-Wrzesinska, ON Jensen, DR Gang, JJ Thelen, IM Møller

Department of Biochemistry and Interdisciplinary Plant Group, University of Missouri, Columbia, Missouri 65211.

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400006953	cytosol, nucleus

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G48870.1	PGSC0003DMT400006953	AT2G03870.2	23221597
AT5G48870.1	PGSC0003DMT400006953	AT2G03870.2	23221597

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g091500.2.1	Tomato	nucleus	100.0	100.0
VIT_05s0051g00850.t01	Wine grape	cytosol	94.32	95.4
Zm00001d038088_P001	Maize	cytosol, extracellular, nucleus	94.32	94.32
Zm00001d010461_P001	Maize	cytosol, extracellular, nucleus	94.32	94.32
EES19467	Sorghum	cytosol, extracellular, nucleus	94.32	94.32
TraesCS1D01G242900.1	Wheat	cytosol, extracellular, nucleus	94.32	93.26
TraesCS1B01G254400.1	Wheat	cytosol, extracellular, nucleus	94.32	93.26
Os05t0389300-01	Rice	cytosol, extracellular, nucleus	94.32	93.26
TraesCS1A01G242900.1	Wheat	cytosol, extracellular, nucleus	93.18	93.18
KRH58439	Soybean	cytosol	92.05	93.1
GSMUA_Achr8P00430_001	Banana	cytosol	90.91	91.95
AT5G48870.1	Thale cress	cytosol	89.77	89.77
Bra036157.1-P	Field mustard	cytosol	89.77	88.76
Bra020674.1-P	Field mustard	cytosol	88.64	87.64
CDY33941	Canola	cytosol	88.64	87.64
CDY19934	Canola	cytosol	88.64	87.64
CDY05658	Canola	cytosol	88.64	87.64
CDY00041	Canola	cytosol	88.64	87.64
KRH42315	Soybean	cytosol, extracellular, plasma membrane	85.23	74.26
HORVU1Hr1G056490.1	Barley	plastid	94.32	58.87

Protein Annotations

EntrezGene:102579366	MapMan:16.4.3.5	Gene3D:2.30.30.100	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0006950	GO:GO:0008150	GO:GO:0009414	GO:GO:0009628	GO:GO:0009719	GO:GO:0009737
GO:GO:0030529	InterPro:LSM_dom_euk/arc	InterPro:LSM_dom_sf	InterPro:LSm5	UniProt:M1CWH0	PFAM:PF01423
EnsemblPlantsGene:PGSC0003DMG400029651	PGSC:PGSC0003DMG400029651	EnsemblPlants:PGSC0003DMT400076269	PANTHER:PTHR20971	SMART:SM00651	SUPFAM:SSF50182
UniParc:UPI000276B5A2	RefSeq:XP_006360334.1	:	:	:	:

Description

Sm [Source:PGSC_GENE;Acc:PGSC0003DMG400029651]

Coordinates

chr9:-:58347333..58350342

Molecular Weight (calculated)

9718.8 Da

IEP (calculated)

4.241

GRAVY (calculated)

-0.108

Length

88 amino acids

Sequence
(BLAST)

1: MSSNNPSQLL PSELIDRCIG SKIWVIMKGD KELVGTLRGF DVYVNMVLED VTEYEITSEG RRITKLDQIL LNGNNIAILV PGGSPPDE

Best Arabidopsis Sequence Match ( AT5G48870.1 )
(BLAST)

1: MANNPSQLLP SELIDRCIGS KIWVIMKGDK ELVGILKGFD VYVNMVLEDV TEYEITAEGR RVTKLDQILL NGNNIAILVP GGSPEDGE

Arabidopsis Description

LSM5SAD1 [Source:UniProtKB/TrEMBL;Acc:A0A178USD1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.