CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH27506	cytosol, nucleus
KRH42700	cytosol, nucleus
KRH58808	cytosol, nucleus

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G48870.1	KRH27506	AT2G03870.2	23221597
AT5G48870.1	KRH42700	AT2G03870.2	23221597
AT5G48870.1	KRH58808	AT2G03870.2	23221597
AT5G48870.1	KRH27506	AT2G03870.2	23221597
AT5G48870.1	KRH42700	AT2G03870.2	23221597
AT5G48870.1	KRH58808	AT2G03870.2	23221597

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_05s0051g00850.t01	Wine grape	cytosol	93.1	93.1
AT5G48870.1	Thale cress	cytosol	93.1	92.05
Solyc09g091500.2.1	Tomato	nucleus	93.1	92.05
PGSC0003DMT400076269	Potato	mitochondrion	93.1	92.05
GSMUA_Achr8P00430_001	Banana	cytosol	91.95	91.95
Zm00001d038088_P001	Maize	cytosol, extracellular, nucleus	90.8	89.77
Zm00001d010461_P001	Maize	cytosol, extracellular, nucleus	90.8	89.77
EES19467	Sorghum	cytosol, extracellular, nucleus	90.8	89.77
TraesCS1D01G242900.1	Wheat	cytosol, extracellular, nucleus	90.8	88.76
TraesCS1B01G254400.1	Wheat	cytosol, extracellular, nucleus	90.8	88.76
Os05t0389300-01	Rice	cytosol, extracellular, nucleus	90.8	88.76
TraesCS1A01G242900.1	Wheat	cytosol, extracellular, nucleus	89.66	88.64
Bra020674.1-P	Field mustard	cytosol	87.36	85.39
CDY33941	Canola	cytosol	87.36	85.39
CDY19934	Canola	cytosol	87.36	85.39
CDY05658	Canola	cytosol	87.36	85.39
CDY00041	Canola	cytosol	87.36	85.39
Bra036157.1-P	Field mustard	cytosol	86.21	84.27
KRH42315	Soybean	cytosol, extracellular, plasma membrane	88.51	76.24
HORVU1Hr1G056490.1	Barley	plastid	90.8	56.03

Protein Annotations

EntrezGene:100527929	MapMan:16.4.3.5	Gene3D:2.30.30.100	EMBL:ACUP02003262	EMBL:BT092830	UniProt:C6T5W6
EnsemblPlantsGene:GLYMA_05G127900	GO:GO:0000398	GO:GO:0000956	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005688
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0030529
GO:GO:0046540	GO:GO:1990726	EnsemblPlants:KRH58439	ProteinID:KRH58439	ProteinID:KRH58439.1	InterPro:LSM_dom_euk/arc
InterPro:LSM_dom_sf	InterPro:LSm5	PFAM:PF01423	PANTHER:PTHR20971	SMART:SM00651	SUPFAM:SSF50182
UniParc:UPI0001B15F93	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr5:-:32139620..32141770

Molecular Weight (calculated)

9575.6 Da

IEP (calculated)

4.256

GRAVY (calculated)

-0.059

Length

87 amino acids

Sequence
(BLAST)

1: MANNPSQLLP SELIDRCIGS KIWVIMKGDK ELVGTLRGFD VYANMVLEDV TEYEITAEGR RITKLDQILL NGNNIAILVP GGSPESE

Best Arabidopsis Sequence Match ( AT5G48870.1 )
(BLAST)

1: MANNPSQLLP SELIDRCIGS KIWVIMKGDK ELVGILKGFD VYVNMVLEDV TEYEITAEGR RVTKLDQILL NGNNIAILVP GGSPEDGE

Arabidopsis Description

LSM5SAD1 [Source:UniProtKB/TrEMBL;Acc:A0A178USD1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.