Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d010461_P001 | cytosol, nucleus |
| Zm00001d038088_P001 | cytosol, nucleus |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES12036 | Sorghum | plastid | 96.84 | 94.85 |
| Solyc10g078450.1.1 | Tomato | cytosol | 43.16 | 93.18 |
| Os04t0388900-01 | Rice | nucleus | 91.58 | 89.69 |
| TraesCS2B01G301300.1 | Wheat | plastid | 92.63 | 88.89 |
| TraesCS2D01G283200.1 | Wheat | plastid | 92.63 | 88.89 |
| TraesCS2A01G284300.1 | Wheat | nucleus | 91.58 | 87.88 |
| VIT_05s0094g00940.t01 | Wine grape | cytosol, nucleus, plastid | 80.0 | 83.52 |
| KRH00694 | Soybean | cytosol | 78.95 | 82.42 |
| KRH40501 | Soybean | nucleus | 78.95 | 82.42 |
| PGSC0003DMT400021589 | Potato | nucleus | 77.89 | 81.32 |
| Zm00001d016571_P001 | Maize | cytosol | 35.79 | 79.07 |
| AT2G43810.1 | Thale cress | cytosol | 74.74 | 78.02 |
| HORVU2Hr1G070000.3 | Barley | plastid | 93.68 | 64.49 |
| GSMUA_Achr8P16430_001 | Banana | plastid | 82.11 | 60.47 |
| Zm00001d053754_P001 | Maize | cytosol | 32.63 | 36.05 |
| Zm00001d016569_P001 | Maize | plastid | 47.37 | 28.3 |
| Zm00001d015460_P001 | Maize | cytosol, plastid | 32.63 | 15.66 |
Protein Annotations
| EntrezGene:100192719 | MapMan:16.4.3.6 | Gene3D:2.30.30.100 | ProteinID:AQK43256.1 | UniProt:B4FCE3 | EMBL:BT034781 |
| EMBL:EU952651 | GO:GO:0000398 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005681 | GO:GO:0005732 |
| GO:GO:0006139 | GO:GO:0006397 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008380 | GO:GO:0009987 |
| GO:GO:0019013 | GO:GO:0030529 | InterPro:LSM_dom_euk/arc | InterPro:LSM_dom_sf | InterPro:Lsm6/sSmF | PFAM:PF01423 |
| PIRSF:PIRSF006609 | PANTHER:PTHR11021 | SMART:SM00651 | SUPFAM:SSF50182 | UniParc:UPI00017B6628 | EnsemblPlantsGene:Zm00001d025239 |
| EnsemblPlants:Zm00001d025239_P001 | EnsemblPlants:Zm00001d025239_T001 | SEG:seg | : | : | : |
Description
Sm-like protein LSM6A
Coordinates
chr10:-:110579973..110588202
Molecular Weight (calculated)
10077.0 Da
IEP (calculated)
9.452
GRAVY (calculated)
-0.320
Length
95 amino acids
Sequence
(BLAST)
(BLAST)
1: MSSGGADKPG SGGGAVKTPS DFLKSIRGRP VVVKLNSGVD YRGILACLDG YMNIAMEQTE EYVNGQLKNK YGDAFIRGNN VLYISTTKRT LADGA
1: MSGVGEKASG TTKTPADFLK SIRGKPVVVK LNSGVDYRGI LTCLDGYMNI AMEQTEEYVN GQLKNTYGDA FVRGNNVLYI STTKGTLSDG A
Arabidopsis Description
LSM6BSm-like protein LSM36B [Source:UniProtKB/Swiss-Prot;Acc:O22823]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.