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Maize
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • plastid 1
  • cytosol 3
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Os11t0657300-01 Rice nucleus 97.67 97.67
Os02t0177500-01 Rice nucleus 96.51 96.51
EES06368 Sorghum cytosol 96.51 96.51
VIT_00s0220g00030.t01 Wine grape cytosol 90.7 88.64
Bra010295.1-P Field mustard cytosol 87.21 85.23
Bra024093.1-P Field mustard cytosol 87.21 85.23
CDX72224 Canola cytosol 87.21 85.23
CDY39189 Canola cytosol 87.21 85.23
CDY14182 Canola cytosol 86.05 84.09
Solyc10g081370.1.1 Tomato nucleus 84.88 82.95
AT2G14285.1 Thale cress cytosol, extracellular, nucleus 58.14 81.97
PGSC0003DMT400072262 Potato cytosol 83.72 81.82
TraesCS7A01G496000.1 Wheat cytosol, extracellular, plastid 82.56 81.61
KRH02869 Soybean extracellular 73.26 80.77
AT4G30220.2 Thale cress cytosol 84.88 76.04
Bra024094.1-P Field mustard cytosol 77.91 74.44
TraesCS6D01G141900.1 Wheat cytosol 90.7 69.03
TraesCS6B01G180100.1 Wheat cytosol 90.7 69.03
CDY65066 Canola mitochondrion 81.4 66.04
CDY71897 Canola cytosol, extracellular 82.56 58.2
HORVU6Hr1G030410.1 Barley cytosol 32.56 56.0
GSMUA_Achr7P16400_001 Banana cytosol 44.19 55.88
CDY65068 Canola extracellular 82.56 50.71
CDY03542 Canola extracellular 87.21 48.7
HORVU6Hr1G056390.1 Barley cytosol 36.05 48.44
Zm00001d015460_P001 Maize cytosol, plastid 97.67 42.42
Zm00001d025239_P001 Maize nucleus 36.05 32.63
Zm00001d016571_P001 Maize cytosol 16.28 32.56
Zm00001d016569_P001 Maize plastid 32.56 17.61
Protein Annotations
EntrezGene:100284147EntrezGene:100285502MapMan:16.4.2.6Gene3D:2.30.30.100ProteinID:AQK60281.1ProteinID:AQK68976.1
UniProt:B4FJ31EMBL:BT037119EMBL:EU954430EMBL:EU961139EMBL:EU967257GO:GO:0000387
GO:GO:0000398GO:GO:0003674GO:GO:0003676GO:GO:0003723GO:GO:0005488GO:GO:0005575
GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0005681GO:GO:0005732GO:GO:0006139
GO:GO:0006397GO:GO:0008150GO:GO:0008152GO:GO:0008380GO:GO:0009987GO:GO:0016043
GO:GO:0019013GO:GO:0030529InterPro:LSM_dom_euk/arcInterPro:LSM_dom_sfInterPro:Lsm6/sSmFPFAM:PF01423
PIRSF:PIRSF006609PANTHER:PTHR11021PANTHER:PTHR11021:SF0SMART:SM00651SUPFAM:SSF50182InterPro:Sm_F
UniParc:UPI00017B72AAEnsemblPlantsGene:Zm00001d053754EnsemblPlants:Zm00001d053754_P001EnsemblPlants:Zm00001d053754_T001::
Description
Probable small nuclear ribonucleoprotein F
Coordinates
chr4:+:240517367..240520135
Molecular Weight (calculated)
9641.6 Da
IEP (calculated)
4.211
GRAVY (calculated)
-0.202
Length
86 amino acids
Sequence
(BLAST)
1: MATVPVNPKP FLNNLTGKPV IVKLKWGMEY KGYLASVDSY MNLQLANTEE YIDGQFSGNL GEILIRCNNV MYLRGVPEDA EIEDAE
Best Arabidopsis Sequence Match ( AT4G30220.1 )
(BLAST)
1: MATIPVNPKP FLNNLTGKTV IVKLKWGMEY KGFLASVDSY MNLQLGNTEE YIDGQLTGNL GEILIRCNNV LYVRGVPEDE ELEDADQD
Arabidopsis Description
RUXFSmall nuclear ribonucleoprotein F [Source:UniProtKB/TrEMBL;Acc:F4JPK5]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.