Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 3
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
Os11t0657300-01 | Rice | nucleus | 97.67 | 97.67 |
Os02t0177500-01 | Rice | nucleus | 96.51 | 96.51 |
EES06368 | Sorghum | cytosol | 96.51 | 96.51 |
VIT_00s0220g00030.t01 | Wine grape | cytosol | 90.7 | 88.64 |
Bra010295.1-P | Field mustard | cytosol | 87.21 | 85.23 |
Bra024093.1-P | Field mustard | cytosol | 87.21 | 85.23 |
CDX72224 | Canola | cytosol | 87.21 | 85.23 |
CDY39189 | Canola | cytosol | 87.21 | 85.23 |
CDY14182 | Canola | cytosol | 86.05 | 84.09 |
Solyc10g081370.1.1 | Tomato | nucleus | 84.88 | 82.95 |
AT2G14285.1 | Thale cress | cytosol, extracellular, nucleus | 58.14 | 81.97 |
PGSC0003DMT400072262 | Potato | cytosol | 83.72 | 81.82 |
TraesCS7A01G496000.1 | Wheat | cytosol, extracellular, plastid | 82.56 | 81.61 |
KRH02869 | Soybean | extracellular | 73.26 | 80.77 |
AT4G30220.2 | Thale cress | cytosol | 84.88 | 76.04 |
Bra024094.1-P | Field mustard | cytosol | 77.91 | 74.44 |
TraesCS6D01G141900.1 | Wheat | cytosol | 90.7 | 69.03 |
TraesCS6B01G180100.1 | Wheat | cytosol | 90.7 | 69.03 |
CDY65066 | Canola | mitochondrion | 81.4 | 66.04 |
CDY71897 | Canola | cytosol, extracellular | 82.56 | 58.2 |
HORVU6Hr1G030410.1 | Barley | cytosol | 32.56 | 56.0 |
GSMUA_Achr7P16400_001 | Banana | cytosol | 44.19 | 55.88 |
CDY65068 | Canola | extracellular | 82.56 | 50.71 |
CDY03542 | Canola | extracellular | 87.21 | 48.7 |
HORVU6Hr1G056390.1 | Barley | cytosol | 36.05 | 48.44 |
Zm00001d015460_P001 | Maize | cytosol, plastid | 97.67 | 42.42 |
Zm00001d025239_P001 | Maize | nucleus | 36.05 | 32.63 |
Zm00001d016571_P001 | Maize | cytosol | 16.28 | 32.56 |
Zm00001d016569_P001 | Maize | plastid | 32.56 | 17.61 |
Protein Annotations
EntrezGene:100284147 | EntrezGene:100285502 | MapMan:16.4.2.6 | Gene3D:2.30.30.100 | ProteinID:AQK60281.1 | ProteinID:AQK68976.1 |
UniProt:B4FJ31 | EMBL:BT037119 | EMBL:EU954430 | EMBL:EU961139 | EMBL:EU967257 | GO:GO:0000387 |
GO:GO:0000398 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | GO:GO:0005575 |
GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005681 | GO:GO:0005732 | GO:GO:0006139 |
GO:GO:0006397 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008380 | GO:GO:0009987 | GO:GO:0016043 |
GO:GO:0019013 | GO:GO:0030529 | InterPro:LSM_dom_euk/arc | InterPro:LSM_dom_sf | InterPro:Lsm6/sSmF | PFAM:PF01423 |
PIRSF:PIRSF006609 | PANTHER:PTHR11021 | PANTHER:PTHR11021:SF0 | SMART:SM00651 | SUPFAM:SSF50182 | InterPro:Sm_F |
UniParc:UPI00017B72AA | EnsemblPlantsGene:Zm00001d053754 | EnsemblPlants:Zm00001d053754_P001 | EnsemblPlants:Zm00001d053754_T001 | : | : |
Description
Probable small nuclear ribonucleoprotein F
Coordinates
chr4:+:240517367..240520135
Molecular Weight (calculated)
9641.6 Da
IEP (calculated)
4.211
GRAVY (calculated)
-0.202
Length
86 amino acids
Sequence
(BLAST)
(BLAST)
1: MATVPVNPKP FLNNLTGKPV IVKLKWGMEY KGYLASVDSY MNLQLANTEE YIDGQFSGNL GEILIRCNNV MYLRGVPEDA EIEDAE
1: MATIPVNPKP FLNNLTGKTV IVKLKWGMEY KGFLASVDSY MNLQLGNTEE YIDGQLTGNL GEILIRCNNV LYVRGVPEDE ELEDADQD
Arabidopsis Description
RUXFSmall nuclear ribonucleoprotein F [Source:UniProtKB/TrEMBL;Acc:F4JPK5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.