Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 2
- extracellular 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU6Hr1G030410.1 | Barley | cytosol | 35.94 | 46.0 |
| TraesCS7A01G496000.1 | Wheat | cytosol, extracellular, plastid | 53.12 | 39.08 |
| KRH02869 | Soybean | extracellular | 46.88 | 38.46 |
| Os11t0657300-01 | Rice | nucleus | 50.0 | 37.21 |
| Os02t0177500-01 | Rice | nucleus | 50.0 | 37.21 |
| GSMUA_Achr7P16400_001 | Banana | cytosol | 39.06 | 36.76 |
| EES06368 | Sorghum | cytosol | 48.44 | 36.05 |
| Zm00001d053754_P001 | Maize | cytosol | 48.44 | 36.05 |
| VIT_00s0220g00030.t01 | Wine grape | cytosol | 48.44 | 35.23 |
| CDY14182 | Canola | cytosol | 48.44 | 35.23 |
| CDY39189 | Canola | cytosol | 46.88 | 34.09 |
| Bra010295.1-P | Field mustard | cytosol | 46.88 | 34.09 |
| Solyc10g081370.1.1 | Tomato | nucleus | 46.88 | 34.09 |
| PGSC0003DMT400072262 | Potato | cytosol | 46.88 | 34.09 |
| Bra024093.1-P | Field mustard | cytosol | 46.88 | 34.09 |
| CDX72224 | Canola | cytosol | 46.88 | 34.09 |
| Bra024094.1-P | Field mustard | cytosol | 45.31 | 32.22 |
| AT4G30220.2 | Thale cress | cytosol | 46.88 | 31.25 |
| CDY65066 | Canola | mitochondrion | 45.31 | 27.36 |
| CDY71897 | Canola | cytosol, extracellular | 45.31 | 23.77 |
| CDY65068 | Canola | extracellular | 45.31 | 20.71 |
| CDY03542 | Canola | extracellular | 46.88 | 19.48 |
| AT2G14285.1 | Thale cress | cytosol, extracellular, nucleus | 15.62 | 16.39 |
| Zm00001d015460_P001 | Maize | cytosol, plastid | 48.44 | 15.66 |
| HORVU2Hr1G070000.3 | Barley | plastid | 18.75 | 8.7 |
Protein Annotations
| EnsemblPlants:HORVU6Hr1G056390.1 | EnsemblPlantsGene:HORVU6Hr1G056390 | Gene3D:2.30.30.100 | GO:GO:0000398 | GO:GO:0005575 | GO:GO:0005732 |
| GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | InterPro:LSM_dom_sf | InterPro:Lsm6/sSmF |
| PANTHER:PTHR11021 | PANTHER:PTHR11021:SF0 | SUPFAM:SSF50182 | UniParc:UPI000B466870 | UniProt:A0A287U9M3 | MapMan:35.2 |
Description
No Description!
Coordinates
chrchr6H:+:362799109..362799504
Molecular Weight (calculated)
7342.2 Da
IEP (calculated)
7.519
GRAVY (calculated)
0.197
Length
64 amino acids
Sequence
(BLAST)
(BLAST)
1: MQIVPVNPKP FLQNLIGKMI IVKLKWGMEY QGTSMVGTDW WSEHPLALGH ENICQIVIFK GDIF
1: MAFVCMCVLQ TIPVNPKPFL NNLTGKTVIV KLKWGMEYKG FLASVDSYMN LQLGNTEEYI DGQLTGNLGE ILIRCNNVLY VRGVPEDEEL EDADQD
Arabidopsis Description
RUXFSmall nuclear ribonucleoprotein F [Source:UniProtKB/TrEMBL;Acc:F4JPK5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.