CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 2
cytosol 1
extracellular 3
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, extracellular, plastid
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY71897	Canola	cytosol, extracellular	85.0	97.54
CDX72224	Canola	cytosol	60.0	95.45
CDY39189	Canola	cytosol	60.0	95.45
CDY14182	Canola	cytosol	60.0	95.45
AT2G14285.1	Thale cress	cytosol, extracellular, nucleus	40.71	93.44
AT4G30220.2	Thale cress	cytosol	58.57	85.42
GSMUA_Achr10P...	Banana	cytosol	51.43	83.72
EES02360	Sorghum	cytosol	51.43	83.72
Zm00001d053754_P001	Maize	cytosol	50.71	82.56
Os11t0657300-01	Rice	nucleus	50.71	82.56
Os02t0177500-01	Rice	nucleus	50.71	82.56
GSMUA_Achr5P16380_001	Banana	cytosol	50.71	82.56
KRG90335	Soybean	cytosol	51.43	81.82
VIT_00s0220g00030.t01	Wine grape	cytosol	50.0	79.55
CDY65066	Canola	mitochondrion	57.86	76.42
PGSC0003DMT400072262	Potato	cytosol	47.14	75.0
Solyc10g081370.1.1	Tomato	nucleus	47.14	75.0
TraesCS7A01G496000.1	Wheat	cytosol, extracellular, plastid	44.29	71.26
TraesCS6B01G180100.1	Wheat	cytosol	49.29	61.06
TraesCS6D01G141900.1	Wheat	cytosol	49.29	61.06
CDY03542	Canola	extracellular	60.0	54.55
HORVU6Hr1G030410.1	Barley	cytosol	19.29	54.0
HORVU6Hr1G056390.1	Barley	cytosol	20.71	45.31
CDX89036	Canola	cytosol, extracellular, nucleus	23.57	37.93
CDY45780	Canola	cytosol, extracellular, nucleus	24.29	36.96
CDY05977	Canola	cytosol	24.29	36.56
Zm00001d015460_P001	Maize	cytosol, plastid	51.43	36.36
CDX67814	Canola	cytosol	23.57	36.26
CDX98396	Canola	cytosol	23.57	36.26

Protein Annotations

MapMan:16.4.2.6	Gene3D:2.30.30.100	UniProt:A0A078JBR9	EnsemblPlants:CDY65068	ProteinID:CDY65068	ProteinID:CDY65068.1
GO:GO:0000387	GO:GO:0000398	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005681	GO:GO:0005732	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016043	GO:GO:0030529	EnsemblPlantsGene:GSBRNA2T00044121001	InterPro:LSM_dom_euk/arc	InterPro:LSM_dom_sf	InterPro:Lsm6/sSmF
PFAM:PF01423	PANTHER:PTHR11021	PANTHER:PTHR11021:SF8	SMART:SM00651	SUPFAM:SSF50182	InterPro:Sm_F
UniParc:UPI0004EF01D8	:	:	:	:	:

Description

BnaAnng20050DBnaAnng20050D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JBR9]

Coordinates

chrLK034647:+:20319..21441

Molecular Weight (calculated)

15832.0 Da

IEP (calculated)

4.344

GRAVY (calculated)

-0.001

Length

140 amino acids

Sequence
(BLAST)

001: MCYYYYGYFN NHSNNFTLNI FTIPVNPKPF LNNLTGKTVI VKLKWGMEYK GFLASVDTYM NLQLGNTEEY IDGQLTGNLG EILIRCINVL YVRGVPEDEE
101: LGDAEQDLPV PVADFSVTGM ECLSFLAIVS RPSYCGPKYI

Best Arabidopsis Sequence Match ( AT4G30220.1 )
(BLAST)

1: MATIPVNPKP FLNNLTGKTV IVKLKWGMEY KGFLASVDSY MNLQLGNTEE YIDGQLTGNL GEILIRCNNV LYVRGVPEDE ELEDADQD

Arabidopsis Description

RUXFSmall nuclear ribonucleoprotein F [Source:UniProtKB/TrEMBL;Acc:F4JPK5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.