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Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • plastid 1
  • cytosol 2
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
HORVU6Hr1G056390.1 Barley cytosol 46.0 35.94
GSMUA_Achr7P16400_001 Banana cytosol 48.0 35.29
KRH02869 Soybean extracellular 54.0 34.62
EES06368 Sorghum cytosol 58.0 33.72
Zm00001d053754_P001 Maize cytosol 56.0 32.56
Os11t0657300-01 Rice nucleus 56.0 32.56
Os02t0177500-01 Rice nucleus 56.0 32.56
CDY39189 Canola cytosol 56.0 31.82
Bra010295.1-P Field mustard cytosol 56.0 31.82
Bra024093.1-P Field mustard cytosol 56.0 31.82
CDX72224 Canola cytosol 56.0 31.82
TraesCS7A01G496000.1 Wheat cytosol, extracellular, plastid 54.0 31.03
CDY14182 Canola cytosol 54.0 30.68
VIT_00s0220g00030.t01 Wine grape cytosol 54.0 30.68
PGSC0003DMT400072262 Potato cytosol 52.0 29.55
Solyc10g081370.1.1 Tomato nucleus 52.0 29.55
Bra024094.1-P Field mustard cytosol 52.0 28.89
AT4G30220.2 Thale cress cytosol 54.0 28.12
CDY65066 Canola mitochondrion 52.0 24.53
CDY71897 Canola cytosol, extracellular 54.0 22.13
CDY65068 Canola extracellular 54.0 19.29
CDY03542 Canola extracellular 56.0 18.18
Zm00001d015460_P001 Maize cytosol, plastid 54.0 13.64
AT2G14285.1 Thale cress cytosol, extracellular, nucleus 14.0 11.48
HORVU2Hr1G070000.3 Barley plastid 22.0 7.97
Protein Annotations
EnsemblPlants:HORVU6Hr1G030410.1EnsemblPlantsGene:HORVU6Hr1G030410Gene3D:2.30.30.100GO:GO:0000398GO:GO:0005575GO:GO:0005732
GO:GO:0006139GO:GO:0008150GO:GO:0008152GO:GO:0009987InterPro:LSM_dom_sfInterPro:Lsm6/sSmF
PANTHER:PTHR11021PANTHER:PTHR11021:SF8SEG:segSUPFAM:SSF50182UniParc:UPI000B46BC1CUniProt:A0A287TS54
MapMan:35.2:::::
Description
No Description!
Coordinates
chrchr6H:+:126387029..126387405
Molecular Weight (calculated)
5743.2 Da
IEP (calculated)
11.039
GRAVY (calculated)
-0.096
Length
50 amino acids
Sequence
(BLAST)
1: QATVSVNLKP FLNNLSGKFV IVKLKWGMEY KGFDISRKMT KIKTMTTFTT
Best Arabidopsis Sequence Match ( AT4G30220.1 )
(BLAST)
1: MATIPVNPKP FLNNLTGKTV IVKLKWGMEY KGFLASVDSY MNLQLGNTEE YIDGQLTGNL GEILIRCNNV LYVRGVPEDE ELEDADQD
Arabidopsis Description
RUXFSmall nuclear ribonucleoprotein F [Source:UniProtKB/TrEMBL;Acc:F4JPK5]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.