Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 2
- golgi 2
- extracellular 3
- plastid 1
- cytosol 2
- vacuole 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT2G14285.1 | Thale cress | cytosol, extracellular, nucleus | 63.54 | 100.0 |
| CDY14182 | Canola | cytosol | 88.54 | 96.59 |
| Bra010295.1-P | Field mustard | cytosol | 87.5 | 95.45 |
| Bra024093.1-P | Field mustard | cytosol | 87.5 | 95.45 |
| CDX72224 | Canola | cytosol | 87.5 | 95.45 |
| CDY39189 | Canola | cytosol | 87.5 | 95.45 |
| GSMUA_Achr5P16380_001 | Banana | cytosol | 78.12 | 87.21 |
| Bra024094.1-P | Field mustard | cytosol | 81.25 | 86.67 |
| GSMUA_Achr10P... | Banana | cytosol | 77.08 | 86.05 |
| EES02360 | Sorghum | cytosol | 77.08 | 86.05 |
| KRG90335 | Soybean | cytosol | 78.12 | 85.23 |
| Zm00001d053754_P001 | Maize | cytosol | 76.04 | 84.88 |
| Os11t0657300-01 | Rice | nucleus | 76.04 | 84.88 |
| Os02t0177500-01 | Rice | nucleus | 76.04 | 84.88 |
| VIT_00s0220g00030.t01 | Wine grape | cytosol | 77.08 | 84.09 |
| PGSC0003DMT400072262 | Potato | cytosol | 72.92 | 79.55 |
| Solyc10g081370.1.1 | Tomato | nucleus | 72.92 | 79.55 |
| CDY65066 | Canola | mitochondrion | 84.38 | 76.42 |
| TraesCS7A01G496000.1 | Wheat | cytosol, extracellular, plastid | 66.67 | 73.56 |
| CDY71897 | Canola | cytosol, extracellular | 85.42 | 67.21 |
| TraesCS6B01G180100.1 | Wheat | cytosol | 73.96 | 62.83 |
| TraesCS6D01G141900.1 | Wheat | cytosol | 73.96 | 62.83 |
| CDY65068 | Canola | extracellular | 85.42 | 58.57 |
| CDY03542 | Canola | extracellular | 88.54 | 55.19 |
| HORVU6Hr1G030410.1 | Barley | cytosol | 28.12 | 54.0 |
| HORVU6Hr1G056390.1 | Barley | cytosol | 31.25 | 46.88 |
| Zm00001d015460_P001 | Maize | cytosol, plastid | 79.17 | 38.38 |
| AT3G59810.2 | Thale cress | cytosol | 34.38 | 36.26 |
| AT2G43810.1 | Thale cress | cytosol | 33.33 | 35.16 |
Protein Annotations
| MapMan:16.4.2.6 | Gene3D:2.30.30.100 | EntrezGene:5007874 | EntrezGene:829145 | ProteinID:AEE85740.1 | ArrayExpress:AT4G30220 |
| EnsemblPlantsGene:AT4G30220 | RefSeq:AT4G30220 | TAIR:AT4G30220 | RefSeq:AT4G30220-TAIR-G | EnsemblPlants:AT4G30220.2 | TAIR:AT4G30220.2 |
| Unigene:At.31849 | UniProt:F4JPK5 | GO:GO:0000387 | GO:GO:0000398 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005681 | GO:GO:0005730 | GO:GO:0005732 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0006139 |
| GO:GO:0006397 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008380 | GO:GO:0009987 | GO:GO:0016043 |
| GO:GO:0019013 | GO:GO:0030529 | InterPro:LSM_dom_euk/arc | InterPro:LSM_dom_sf | InterPro:Lsm6/sSmF | RefSeq:NP_001190872.1 |
| PFAM:PF01423 | PIRSF:PIRSF006609 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 |
| PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PO:PO:0025281 | PANTHER:PTHR11021 | PANTHER:PTHR11021:SF8 | Symbol:RUXF | SMART:SM00651 |
| SUPFAM:SSF50182 | InterPro:Sm_F | UniParc:UPI0001E92FCD | : | : | : |
Description
RUXFSmall nuclear ribonucleoprotein F [Source:UniProtKB/TrEMBL;Acc:F4JPK5]
Coordinates
chr4:-:14802960..14804358
Molecular Weight (calculated)
10789.0 Da
IEP (calculated)
4.047
GRAVY (calculated)
-0.057
Length
96 amino acids
Sequence
(BLAST)
(BLAST)
1: MAFVCMCVLQ TIPVNPKPFL NNLTGKTVIV KLKWGMEYKG FLASVDSYMN LQLGNTEEYI DGQLTGNLGE ILIRCNNVLY VRGVPEDEEL EDADQD
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.