Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 1
- golgi 1
- extracellular 1
- nucleus 3
- cytosol 2
- mitochondrion 1
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra014525.1-P | Field mustard | cytosol | 90.11 | 89.13 |
| CDY45780 | Canola | cytosol, extracellular, nucleus | 90.11 | 89.13 |
| Bra003391.1-P | Field mustard | cytosol | 89.01 | 89.01 |
| CDX67814 | Canola | cytosol | 89.01 | 89.01 |
| CDX98396 | Canola | cytosol | 89.01 | 89.01 |
| CDX89036 | Canola | cytosol, extracellular, nucleus | 84.62 | 88.51 |
| Bra007478.1-P | Field mustard | cytosol | 90.11 | 88.17 |
| CDY05977 | Canola | cytosol | 90.11 | 88.17 |
| Solyc10g078450.1.1 | Tomato | cytosol | 41.76 | 86.36 |
| AT2G43810.1 | Thale cress | cytosol | 82.42 | 82.42 |
| Zm00001d016571_P001 | Maize | cytosol | 34.07 | 72.09 |
| AT2G14285.1 | Thale cress | cytosol, extracellular, nucleus | 24.18 | 36.07 |
| AT4G30220.2 | Thale cress | cytosol | 36.26 | 34.38 |
| Zm00001d016569_P001 | Maize | plastid | 46.15 | 26.42 |
Protein Annotations
| MapMan:16.4.3.6 | Gene3D:2.30.30.100 | EntrezGene:825150 | ProteinID:AEE79971.1 | ProteinID:ANM65508.1 | ProteinID:ANM65509.1 |
| ArrayExpress:AT3G59810 | EnsemblPlantsGene:AT3G59810 | RefSeq:AT3G59810 | TAIR:AT3G59810 | RefSeq:AT3G59810-TAIR-G | EnsemblPlants:AT3G59810.2 |
| EMBL:AY086430 | EMBL:BT002850 | EMBL:BT004433 | ProteinID:CAB75800.1 | GO:GO:0000398 | GO:GO:0000932 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005681 | GO:GO:0005688 | GO:GO:0005730 | GO:GO:0005732 |
| GO:GO:0005737 | GO:GO:0006139 | GO:GO:0006397 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008380 |
| GO:GO:0009987 | GO:GO:0030490 | GO:GO:0030529 | GO:GO:0046540 | InterPro:LSM_dom_euk/arc | InterPro:LSM_dom_sf |
| InterPro:Lsm6/sSmF | RefSeq:NP_001327468.1 | RefSeq:NP_001327469.1 | RefSeq:NP_191540.1 | PFAM:PF01423 | PIRSF:PIRSF006609 |
| PANTHER:PTHR11021 | UniProt:Q9M1Z3 | SMART:SM00651 | SUPFAM:SSF50182 | UniParc:UPI000000BDF9 | : |
Description
LSM6ASm-like protein LSM6A [Source:UniProtKB/Swiss-Prot;Acc:Q9M1Z3]
Coordinates
chr3:+:22096503..22097908
Molecular Weight (calculated)
9913.9 Da
IEP (calculated)
6.621
GRAVY (calculated)
-0.260
Length
91 amino acids
Sequence
(BLAST)
(BLAST)
1: MSGVEEKVSG TTKTPADFLK SIRGRPVVVK LNSGVDYRGT LTCLDGYMNI AMEQTEEYVN GQLKNKYGDA FIRGNNVLYI STVNMTVADG A
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.