Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc10g078450.1.1 | Tomato | cytosol | 74.42 | 72.73 |
| Zm00001d025239_P001 | Maize | nucleus | 79.07 | 35.79 |
| Bra003391.1-P | Field mustard | cytosol | 74.42 | 35.16 |
| CDX67814 | Canola | cytosol | 74.42 | 35.16 |
| CDX98396 | Canola | cytosol | 74.42 | 35.16 |
| AT3G59810.2 | Thale cress | cytosol | 72.09 | 34.07 |
| Bra014525.1-P | Field mustard | cytosol | 72.09 | 33.7 |
| CDY45780 | Canola | cytosol, extracellular, nucleus | 72.09 | 33.7 |
| Bra007478.1-P | Field mustard | cytosol | 72.09 | 33.33 |
| CDY05977 | Canola | cytosol | 72.09 | 33.33 |
| CDX89036 | Canola | cytosol, extracellular, nucleus | 65.12 | 32.18 |
| Zm00001d016569_P001 | Maize | plastid | 60.47 | 16.35 |
| Zm00001d053754_P001 | Maize | cytosol | 32.56 | 16.28 |
| Zm00001d015460_P001 | Maize | cytosol, plastid | 32.56 | 7.07 |
Protein Annotations
| EnsemblPlants:Zm00001d016571_P001 | EnsemblPlants:Zm00001d016571_T001 | EnsemblPlantsGene:Zm00001d016571 | Gene3D:2.30.30.100 | GO:GO:0000398 | GO:GO:0005575 |
| GO:GO:0005732 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | InterPro:LSM_dom_euk/arc |
| InterPro:LSM_dom_sf | InterPro:Lsm6/sSmF | PANTHER:PTHR11021 | PANTHER:PTHR11021:SF1 | PFAM:PF01423 | ProteinID:AQK71174.1 |
| SUPFAM:SSF50182 | UniParc:UPI0008427BBB | UniProt:A0A1D6H8X9 | MapMan:35.2 | : | : |
Description
Sm-like protein LSM6A
Coordinates
chr5:-:167858551..167858780
Molecular Weight (calculated)
4856.8 Da
IEP (calculated)
4.773
GRAVY (calculated)
-0.567
Length
43 amino acids
Sequence
(BLAST)
(BLAST)
1: MNIAMQQTEE YVNGQLKKEE GDAFIRGNGV LYISIPKRTL ADN
1: MSGVGEKASG TTKTPADFLK SIRGKPVVVK LNSGVDYRGI LTCLDGYMNI AMEQTEEYVN GQLKNTYGDA FVRGNNVLYI STTKGTLSDG A
Arabidopsis Description
LSM6BSm-like protein LSM36B [Source:UniProtKB/Swiss-Prot;Acc:O22823]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.