CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, nucleus, cytosol

Predictor Summary:

extracellular 2
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 1
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular, nucleus
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	extracellular
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra014525.1-P	Field mustard	cytosol	98.91	98.91
CDY05977	Canola	cytosol	98.91	97.85
CDX89036	Canola	cytosol, extracellular, nucleus	92.39	97.7
CDX67814	Canola	cytosol	94.57	95.6
CDX98396	Canola	cytosol	94.57	95.6
AT3G59810.2	Thale cress	cytosol	89.13	90.11
Solyc10g078450.1.1	Tomato	cytosol	41.3	86.36
KRH40501	Soybean	nucleus	82.61	83.52
KRH00694	Soybean	cytosol	82.61	83.52
VIT_05s0094g00940.t01	Wine grape	cytosol, nucleus, plastid	81.52	82.42
PGSC0003DMT400021589	Potato	nucleus	81.52	82.42
EES12036	Sorghum	plastid	84.78	80.41
TraesCS2A01G284300.1	Wheat	nucleus	85.87	79.8
GSMUA_Achr6P11930_001	Banana	cytosol	83.7	79.38
TraesCS2B01G301300.1	Wheat	plastid	84.78	78.79
TraesCS2D01G283200.1	Wheat	plastid	84.78	78.79
Os04t0388900-01	Rice	nucleus	82.61	78.35
KXG30274	Sorghum	plastid	81.52	77.32
Os02t0510100-01	Rice	cytosol, nucleus, plastid	83.7	76.24
Zm00001d016571_P001	Maize	cytosol	33.7	72.09
GSMUA_Achr8P16430_001	Banana	plastid	80.43	57.36
HORVU2Hr1G070000.3	Barley	plastid	85.87	57.25
CDY39189	Canola	cytosol	35.87	37.5
CDY14182	Canola	cytosol	35.87	37.5
CDX72224	Canola	cytosol	35.87	37.5
CDY65066	Canola	mitochondrion	36.96	32.08
Zm00001d016569_P001	Maize	plastid	48.91	28.3
CDY71897	Canola	cytosol, extracellular	34.78	26.23
CDY65068	Canola	extracellular	36.96	24.29
CDY03542	Canola	extracellular	35.87	21.43

Protein Annotations

MapMan:16.4.3.6	Gene3D:2.30.30.100	UniProt:A0A078I4I4	EnsemblPlants:CDY45780	ProteinID:CDY45780	ProteinID:CDY45780.1
GO:GO:0000398	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005681	GO:GO:0005732	GO:GO:0006139
GO:GO:0006397	GO:GO:0008150	GO:GO:0008152	GO:GO:0008380	GO:GO:0009987	GO:GO:0030529
EnsemblPlantsGene:GSBRNA2T00082708001	InterPro:LSM_dom_euk/arc	InterPro:LSM_dom_sf	InterPro:Lsm6/sSmF	PFAM:PF01423	PIRSF:PIRSF006609
PANTHER:PTHR11021	SMART:SM00651	SUPFAM:SSF50182	UniParc:UPI0004EE5F22	:	:

Description

BnaC04g22660DBnaC04g22660D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I4I4]

Coordinates

chrLK032636:-:119127..120417

Molecular Weight (calculated)

9891.8 Da

IEP (calculated)

8.435

GRAVY (calculated)

-0.275

Length

92 amino acids

Sequence
(BLAST)

1: MSGSGDNKVS GTTKTPADFL KSIRGRPVVV KLNSGVDYRG ILACLDGYMN IAMEQTEEYV NGQLKNKYGD AFIRGNNVLY ISTVNTPLAD GA

Best Arabidopsis Sequence Match ( AT3G59810.3 )
(BLAST)

1: MSGVEEKVSG TTKTPADFLK SIRGRPVVVK LNSGVDYRGT LTCLDGYMNI AMEQTEEYVN GQLKNKYGDA FIRGNNVLYI STVNMTVADG A

Arabidopsis Description

LSM6ASm-like protein LSM6A [Source:UniProtKB/Swiss-Prot;Acc:Q9M1Z3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.