CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1
cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	secretory
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra010295.1-P	Field mustard	cytosol	98.86	98.86
CDX72224	Canola	cytosol	98.86	98.86
CDY39189	Canola	cytosol	98.86	98.86
AT2G14285.1	Thale cress	cytosol, extracellular, nucleus	67.05	96.72
AT4G30220.2	Thale cress	cytosol	96.59	88.54
GSMUA_Achr10P...	Banana	cytosol	85.23	87.21
EES02360	Sorghum	cytosol	85.23	87.21
Zm00001d053754_P001	Maize	cytosol	84.09	86.05
Os11t0657300-01	Rice	nucleus	84.09	86.05
Os02t0177500-01	Rice	nucleus	84.09	86.05
GSMUA_Achr5P16380_001	Banana	cytosol	84.09	86.05
KRG90335	Soybean	cytosol	85.23	85.23
VIT_00s0220g00030.t01	Wine grape	cytosol	82.95	82.95
Solyc10g081370.1.1	Tomato	nucleus	78.41	78.41
PGSC0003DMT400072262	Potato	cytosol	78.41	78.41
CDY65066	Canola	mitochondrion	93.18	77.36
TraesCS7A01G496000.1	Wheat	cytosol, extracellular, plastid	73.86	74.71
CDY71897	Canola	cytosol, extracellular	95.45	68.85
TraesCS6B01G180100.1	Wheat	cytosol	78.41	61.06
TraesCS6D01G141900.1	Wheat	cytosol	78.41	61.06
CDY65068	Canola	extracellular	95.45	60.0
CDY03542	Canola	extracellular	98.86	56.49
HORVU6Hr1G030410.1	Barley	cytosol	30.68	54.0
HORVU6Hr1G056390.1	Barley	cytosol	35.23	48.44
Zm00001d015460_P001	Maize	cytosol, plastid	84.09	37.37
CDX67814	Canola	cytosol	37.5	36.26
CDX98396	Canola	cytosol	37.5	36.26
CDY45780	Canola	cytosol, extracellular, nucleus	37.5	35.87
CDX89036	Canola	cytosol, extracellular, nucleus	35.23	35.63
CDY05977	Canola	cytosol	37.5	35.48

Protein Annotations

MapMan:16.4.2.6	Gene3D:2.30.30.100	GO:A0A078FMM6	UniProt:A0A078FMM6	EnsemblPlants:CDY14182	ProteinID:CDY14182
ProteinID:CDY14182.1	GO:GO:0000387	GO:GO:0000398	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005681
GO:GO:0005732	GO:GO:0006139	GO:GO:0006397	GO:GO:0008150	GO:GO:0008152	GO:GO:0008380
GO:GO:0009987	GO:GO:0016043	GO:GO:0030529	EnsemblPlantsGene:GSBRNA2T00078739001	InterPro:LSM_dom_euk/arc	InterPro:LSM_dom_sf
InterPro:Lsm6/sSmF	PFAM:PF01423	PIRSF:PIRSF006609	PANTHER:PTHR11021	PANTHER:PTHR11021:SF8	SMART:SM00651
SUPFAM:SSF50182	InterPro:Sm_F	UniParc:UPI0004EEB78B	:	:	:

Description

BnaA08g13130DBnaA08g13130D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FMM6]

Coordinates

chrLK032041:+:2755..4068

Molecular Weight (calculated)

9863.8 Da

IEP (calculated)

4.123

GRAVY (calculated)

-0.297

Length

88 amino acids

Sequence
(BLAST)

1: MQTIPVNPKP FLNNLTGKTV IVKLKWGMEY KGFLASVDSY MNLQLGNTEE YIDGQLTGNL GEILIRCNNV LYVRGVPEDE ELGDAEQD

Best Arabidopsis Sequence Match ( AT4G30220.2 )
(BLAST)

1: MAFVCMCVLQ TIPVNPKPFL NNLTGKTVIV KLKWGMEYKG FLASVDSYMN LQLGNTEEYI DGQLTGNLGE ILIRCNNVLY VRGVPEDEEL EDADQD

Arabidopsis Description

RUXFSmall nuclear ribonucleoprotein F [Source:UniProtKB/TrEMBL;Acc:F4JPK5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.