Factsheet for Os02t0177500-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 2
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 2
plastid 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	extracellular

nucleus: 19621931

msms PMID: 19621931 doi

T Aki, S Yanagisawa

Department of Applied Biological Chemistry, The University of Tokyo, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os11t0657300-01	Rice	nucleus	98.84	98.84
EES02360	Sorghum	cytosol	97.67	97.67
Zm00001d053754_P001	Maize	cytosol	96.51	96.51
GSMUA_Achr10P...	Banana	cytosol	96.51	96.51
GSMUA_Achr5P16380_001	Banana	cytosol	95.35	95.35
VIT_00s0220g00030.t01	Wine grape	cytosol	93.02	90.91
KRG90335	Soybean	cytosol	93.02	90.91
CDX72224	Canola	cytosol	87.21	85.23
CDY39189	Canola	cytosol	87.21	85.23
Solyc10g081370.1.1	Tomato	nucleus	87.21	85.23
Bra024093.1-P	Field mustard	cytosol	87.21	85.23
Bra010295.1-P	Field mustard	cytosol	87.21	85.23
CDY14182	Canola	cytosol	86.05	84.09
PGSC0003DMT400072262	Potato	cytosol	86.05	84.09
AT2G14285.1	Thale cress	cytosol, extracellular, nucleus	58.14	81.97
TraesCS7A01G496000.1	Wheat	cytosol, extracellular, plastid	82.56	81.61
AT4G30220.2	Thale cress	cytosol	84.88	76.04
Bra024094.1-P	Field mustard	cytosol	77.91	74.44
TraesCS6B01G180100.1	Wheat	cytosol	91.86	69.91
TraesCS6D01G141900.1	Wheat	cytosol	91.86	69.91
CDY65066	Canola	mitochondrion	81.4	66.04
CDY71897	Canola	cytosol, extracellular	82.56	58.2
HORVU6Hr1G030410.1	Barley	cytosol	32.56	56.0
CDY65068	Canola	extracellular	82.56	50.71
HORVU6Hr1G056390.1	Barley	cytosol	37.21	50.0
CDY03542	Canola	extracellular	87.21	48.7
Zm00001d015460_P001	Maize	cytosol, plastid	94.19	40.91
Os04t0388900-01	Rice	nucleus	36.05	31.96
Os02t0510100-01	Rice	cytosol, nucleus, plastid	36.05	30.69

Protein Annotations

MapMan:16.4.2.6	Gene3D:2.30.30.100	EntrezGene:4328484	ProteinID:BAD27986.1	ProteinID:BAF07982.1	ProteinID:BAS77266.1
GO:GO:0000387	GO:GO:0000398	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005681	GO:GO:0005685
GO:GO:0005732	GO:GO:0006139	GO:GO:0006397	GO:GO:0008150	GO:GO:0008152	GO:GO:0008380
GO:GO:0009987	GO:GO:0016043	GO:GO:0071013	InterPro:LSM_dom_euk/arc	InterPro:LSM_dom_sf	InterPro:Lsm6/sSmF
EnsemblPlantsGene:Os02g0177500	EnsemblPlants:Os02t0177500-01	PFAM:PF01423	PIRSF:PIRSF006609	PANTHER:PTHR11021	PANTHER:PTHR11021:SF0
UniProt:Q6ETN4	SMART:SM00651	SUPFAM:SSF50182	InterPro:Sm_F	UniParc:UPI00003CE594	RefSeq:XP_015623279.1

Description

Similar to Small nuclear ribonucleoprotein F (snRNP-F) (Sm protein F) (Sm-F) (SmF). (Os02t0177500-01)

Coordinates

chr2:-:4270620..4274199

Molecular Weight (calculated)

9681.6 Da

IEP (calculated)

4.211

GRAVY (calculated)

-0.181

Length

86 amino acids

Sequence
(BLAST)

1: MATVPVNPKP FLNNLTGKPV IVKLKWGMEY KGYLVSVDSY MNLQLANTEE YIDGQFSGNL GEILIRCNNV LYLRGVPEDT EIEDAE

Best Arabidopsis Sequence Match ( AT4G30220.1 )
(BLAST)

1: MATIPVNPKP FLNNLTGKTV IVKLKWGMEY KGFLASVDSY MNLQLGNTEE YIDGQLTGNL GEILIRCNNV LYVRGVPEDE ELEDADQD

Arabidopsis Description

RUXFSmall nuclear ribonucleoprotein F [Source:UniProtKB/TrEMBL;Acc:F4JPK5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.