Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 2
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT2G14285.1 | Thale cress | cytosol, extracellular, nucleus | 60.0 | 88.52 |
| Bra010295.1-P | Field mustard | cytosol | 85.56 | 87.5 |
| Bra024093.1-P | Field mustard | cytosol | 85.56 | 87.5 |
| AT4G30220.2 | Thale cress | cytosol | 86.67 | 81.25 |
| GSMUA_Achr5P16380_001 | Banana | cytosol | 76.67 | 80.23 |
| EES02360 | Sorghum | cytosol | 75.56 | 79.07 |
| GSMUA_Achr10P... | Banana | cytosol | 75.56 | 79.07 |
| VIT_00s0220g00030.t01 | Wine grape | cytosol | 76.67 | 78.41 |
| KRG90335 | Soybean | cytosol | 76.67 | 78.41 |
| Zm00001d053754_P001 | Maize | cytosol | 74.44 | 77.91 |
| Os11t0657300-01 | Rice | nucleus | 74.44 | 77.91 |
| Os02t0177500-01 | Rice | nucleus | 74.44 | 77.91 |
| CDY65066 | Canola | mitochondrion | 84.44 | 71.7 |
| PGSC0003DMT400072262 | Potato | cytosol | 70.0 | 71.59 |
| Solyc10g081370.1.1 | Tomato | nucleus | 70.0 | 71.59 |
| TraesCS7A01G496000.1 | Wheat | cytosol, extracellular, plastid | 67.78 | 70.11 |
| TraesCS6B01G180100.1 | Wheat | cytosol | 71.11 | 56.64 |
| TraesCS6D01G141900.1 | Wheat | cytosol | 71.11 | 56.64 |
| HORVU6Hr1G030410.1 | Barley | cytosol | 28.89 | 52.0 |
| HORVU6Hr1G056390.1 | Barley | cytosol | 32.22 | 45.31 |
| Bra003391.1-P | Field mustard | cytosol | 35.56 | 35.16 |
| Bra014525.1-P | Field mustard | cytosol | 35.56 | 34.78 |
| Bra007478.1-P | Field mustard | cytosol | 35.56 | 34.41 |
| Zm00001d015460_P001 | Maize | cytosol, plastid | 74.44 | 33.84 |
Protein Annotations
| MapMan:16.4.2.6 | Gene3D:2.30.30.100 | EnsemblPlantsGene:Bra024094 | EnsemblPlants:Bra024094.1 | EnsemblPlants:Bra024094.1-P | GO:GO:0000387 |
| GO:GO:0000398 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005681 | GO:GO:0005732 | GO:GO:0006139 |
| GO:GO:0006397 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008380 | GO:GO:0009987 | GO:GO:0016043 |
| GO:GO:0030529 | InterPro:LSM_dom_euk/arc | InterPro:LSM_dom_sf | InterPro:Lsm6/sSmF | UniProt:M4E5P0 | PFAM:PF01423 |
| PIRSF:PIRSF006609 | PANTHER:PTHR11021 | PANTHER:PTHR11021:SF8 | SMART:SM00651 | SUPFAM:SSF50182 | InterPro:Sm_F |
| UniParc:UPI0002540DB8 | : | : | : | : | : |
Description
AT4G30220 (E=4e-041) RUXF | RUXF (SMALL NUCLEAR RIBONUCLEOPROTEIN F)
Coordinates
chrA03:-:27690388..27691139
Molecular Weight (calculated)
10096.2 Da
IEP (calculated)
4.123
GRAVY (calculated)
-0.089
Length
90 amino acids
Sequence
(BLAST)
(BLAST)
1: MIVLGPYIPV NPKPFLNNLT GKTVIVKLKW GMEYKGFLAS VDSYMNLQLG NTEEYIDGQL TGNLGEILIR CDNVLYVRGV SEDEELAEQD
1: MATIPVNPKP FLNNLTGKTV IVKLKWGMEY KGFLASVDSY MNLQLGNTEE YIDGQLTGNL GEILIRCNNV LYVRGVPEDE ELEDADQD
Arabidopsis Description
RUXFSmall nuclear ribonucleoprotein F [Source:UniProtKB/TrEMBL;Acc:F4JPK5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.