Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX67814 | Canola | cytosol | 100.0 | 100.0 |
| CDX98396 | Canola | cytosol | 100.0 | 100.0 |
| Bra014525.1-P | Field mustard | cytosol | 95.6 | 94.57 |
| Bra007478.1-P | Field mustard | cytosol | 95.6 | 93.55 |
| AT3G59810.2 | Thale cress | cytosol | 89.01 | 89.01 |
| Solyc10g078450.1.1 | Tomato | cytosol | 42.86 | 88.64 |
| KRH00694 | Soybean | cytosol | 83.52 | 83.52 |
| VIT_05s0094g00940.t01 | Wine grape | cytosol, nucleus, plastid | 83.52 | 83.52 |
| PGSC0003DMT400021589 | Potato | nucleus | 83.52 | 83.52 |
| KRH40501 | Soybean | nucleus | 83.52 | 83.52 |
| EES12036 | Sorghum | plastid | 85.71 | 80.41 |
| TraesCS2A01G284300.1 | Wheat | nucleus | 86.81 | 79.8 |
| TraesCS2B01G301300.1 | Wheat | plastid | 85.71 | 78.79 |
| TraesCS2D01G283200.1 | Wheat | plastid | 85.71 | 78.79 |
| GSMUA_Achr6P11930_001 | Banana | cytosol | 83.52 | 78.35 |
| KXG30274 | Sorghum | plastid | 83.52 | 78.35 |
| Os04t0388900-01 | Rice | nucleus | 83.52 | 78.35 |
| Os02t0510100-01 | Rice | cytosol, nucleus, plastid | 86.81 | 78.22 |
| Zm00001d016571_P001 | Maize | cytosol | 35.16 | 74.42 |
| GSMUA_Achr8P16430_001 | Banana | plastid | 81.32 | 57.36 |
| HORVU2Hr1G070000.3 | Barley | plastid | 86.81 | 57.25 |
| Bra024093.1-P | Field mustard | cytosol | 36.26 | 37.5 |
| Bra010295.1-P | Field mustard | cytosol | 36.26 | 37.5 |
| Bra024094.1-P | Field mustard | cytosol | 35.16 | 35.56 |
| Zm00001d016569_P001 | Maize | plastid | 49.45 | 28.3 |
Protein Annotations
| MapMan:16.4.3.6 | Gene3D:2.30.30.100 | EnsemblPlantsGene:Bra003391 | EnsemblPlants:Bra003391.1 | EnsemblPlants:Bra003391.1-P | GO:GO:0000398 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005681 | GO:GO:0005732 | GO:GO:0006139 | GO:GO:0006397 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008380 | GO:GO:0009987 | GO:GO:0030529 | InterPro:LSM_dom_euk/arc |
| InterPro:LSM_dom_sf | InterPro:Lsm6/sSmF | UniProt:M4CGQ8 | PFAM:PF01423 | PIRSF:PIRSF006609 | PANTHER:PTHR11021 |
| SMART:SM00651 | SUPFAM:SSF50182 | UniParc:UPI0002541780 | : | : | : |
Description
AT2G43810 (E=2e-042) | small nuclear ribonucleoprotein F, putative / U6 snRNA-associated Sm-like protein, putative / Sm protein F, putative
Coordinates
chrA07:+:12985083..12985624
Molecular Weight (calculated)
9759.8 Da
IEP (calculated)
9.024
GRAVY (calculated)
-0.186
Length
91 amino acids
Sequence
(BLAST)
(BLAST)
1: MSGSGDKVVG TTKTPADFLK SIRGRPVVVK LNSGVDYRGI LACLDGYMNI AMEQTEEYVN GQLKNKYGDA FIRGNNVLYI STVKGPLADG A
1: MSGVGEKASG TTKTPADFLK SIRGKPVVVK LNSGVDYRGI LTCLDGYMNI AMEQTEEYVN GQLKNTYGDA FVRGNNVLYI STTKGTLSDG A
Arabidopsis Description
LSM6BSm-like protein LSM36B [Source:UniProtKB/Swiss-Prot;Acc:O22823]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.