Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY45780 | Canola | cytosol, extracellular, nucleus | 98.91 | 98.91 |
| CDX89036 | Canola | cytosol, extracellular, nucleus | 93.48 | 98.85 |
| Bra007478.1-P | Field mustard | cytosol | 97.83 | 96.77 |
| Bra003391.1-P | Field mustard | cytosol | 94.57 | 95.6 |
| AT3G59810.2 | Thale cress | cytosol | 89.13 | 90.11 |
| Solyc10g078450.1.1 | Tomato | cytosol | 41.3 | 86.36 |
| KRH00694 | Soybean | cytosol | 82.61 | 83.52 |
| KRH40501 | Soybean | nucleus | 82.61 | 83.52 |
| VIT_05s0094g00940.t01 | Wine grape | cytosol, nucleus, plastid | 81.52 | 82.42 |
| PGSC0003DMT400021589 | Potato | nucleus | 81.52 | 82.42 |
| EES12036 | Sorghum | plastid | 84.78 | 80.41 |
| TraesCS2A01G284300.1 | Wheat | nucleus | 85.87 | 79.8 |
| GSMUA_Achr6P11930_001 | Banana | cytosol | 83.7 | 79.38 |
| TraesCS2D01G283200.1 | Wheat | plastid | 84.78 | 78.79 |
| TraesCS2B01G301300.1 | Wheat | plastid | 84.78 | 78.79 |
| Os04t0388900-01 | Rice | nucleus | 82.61 | 78.35 |
| KXG30274 | Sorghum | plastid | 81.52 | 77.32 |
| Os02t0510100-01 | Rice | cytosol, nucleus, plastid | 83.7 | 76.24 |
| Zm00001d016571_P001 | Maize | cytosol | 33.7 | 72.09 |
| GSMUA_Achr8P16430_001 | Banana | plastid | 80.43 | 57.36 |
| HORVU2Hr1G070000.3 | Barley | plastid | 85.87 | 57.25 |
| Bra010295.1-P | Field mustard | cytosol | 35.87 | 37.5 |
| Bra024093.1-P | Field mustard | cytosol | 35.87 | 37.5 |
| Bra024094.1-P | Field mustard | cytosol | 34.78 | 35.56 |
| Zm00001d016569_P001 | Maize | plastid | 48.91 | 28.3 |
Protein Annotations
| MapMan:16.4.3.6 | Gene3D:2.30.30.100 | EnsemblPlantsGene:Bra014525 | EnsemblPlants:Bra014525.1 | EnsemblPlants:Bra014525.1-P | GO:GO:0000398 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005681 | GO:GO:0005732 | GO:GO:0006139 | GO:GO:0006397 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008380 | GO:GO:0009987 | GO:GO:0030529 | InterPro:LSM_dom_euk/arc |
| InterPro:LSM_dom_sf | InterPro:Lsm6/sSmF | UniProt:M4DDF7 | PFAM:PF01423 | PIRSF:PIRSF006609 | PANTHER:PTHR11021 |
| SMART:SM00651 | SUPFAM:SSF50182 | UniParc:UPI0002543FCF | : | : | : |
Description
AT3G59810 (E=6e-042) | small nuclear ribonucleoprotein F, putative / U6 snRNA-associated Sm-like protein, putative / Sm protein F, putative
Coordinates
chrA04:-:1215731..1216381
Molecular Weight (calculated)
9903.8 Da
IEP (calculated)
8.435
GRAVY (calculated)
-0.218
Length
92 amino acids
Sequence
(BLAST)
(BLAST)
1: MSGSGDNKVS GTTKTPADFL KSIRGRPVVV KLNSGVDYRG ILACLDGYMN IAMEQTEEYV NGQLKNKYGD AFIRGNNVLY ISTVNIPLAD GA
1: MSGVEEKVSG TTKTPADFLK SIRGRPVVVK LNSGVDYRGT LTCLDGYMNI AMEQTEEYVN GQLKNKYGDA FIRGNNVLYI STVNMTVADG A
Arabidopsis Description
LSM6ASm-like protein LSM6A [Source:UniProtKB/Swiss-Prot;Acc:Q9M1Z3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.