Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 2
- nucleus 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc09g091500.2.1 | cytosol, nucleus |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G43810.1 | Solyc09g091500.2.1 | AT5G48870.1 | 23221597 |
| AT2G43810.1 | Solyc09g091500.2.1 | AT5G48870.1 | 23221597 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d016571_P001 | Maize | cytosol | 72.73 | 74.42 |
| EES12036 | Sorghum | plastid | 95.45 | 43.3 |
| Zm00001d025239_P001 | Maize | nucleus | 93.18 | 43.16 |
| Bra003391.1-P | Field mustard | cytosol | 88.64 | 42.86 |
| CDX67814 | Canola | cytosol | 88.64 | 42.86 |
| PGSC0003DMT400021589 | Potato | nucleus | 88.64 | 42.86 |
| CDX98396 | Canola | cytosol | 88.64 | 42.86 |
| Os04t0388900-01 | Rice | nucleus | 93.18 | 42.27 |
| KRH00694 | Soybean | cytosol | 86.36 | 41.76 |
| VIT_05s0094g00940.t01 | Wine grape | cytosol, nucleus, plastid | 86.36 | 41.76 |
| KRH40501 | Soybean | nucleus | 86.36 | 41.76 |
| AT3G59810.2 | Thale cress | cytosol | 86.36 | 41.76 |
| Os02t0510100-01 | Rice | cytosol, nucleus, plastid | 95.45 | 41.58 |
| TraesCS2D01G283200.1 | Wheat | plastid | 93.18 | 41.41 |
| TraesCS2B01G301300.1 | Wheat | plastid | 93.18 | 41.41 |
| TraesCS2A01G284300.1 | Wheat | nucleus | 93.18 | 41.41 |
| Bra014525.1-P | Field mustard | cytosol | 86.36 | 41.3 |
| CDY45780 | Canola | cytosol, extracellular, nucleus | 86.36 | 41.3 |
| GSMUA_Achr6P11930_001 | Banana | cytosol | 90.91 | 41.24 |
| Bra007478.1-P | Field mustard | cytosol | 86.36 | 40.86 |
| CDY05977 | Canola | cytosol | 86.36 | 40.86 |
| CDX89036 | Canola | cytosol, extracellular, nucleus | 79.55 | 40.23 |
| KXG30274 | Sorghum | plastid | 88.64 | 40.21 |
| AT2G43810.1 | Thale cress | cytosol | 75.0 | 36.26 |
| GSMUA_Achr8P16430_001 | Banana | plastid | 93.18 | 31.78 |
| HORVU2Hr1G070000.3 | Barley | plastid | 93.18 | 29.71 |
| Zm00001d016569_P001 | Maize | plastid | 63.64 | 17.61 |
| Solyc10g081370.1.1 | Tomato | nucleus | 31.82 | 15.91 |
Protein Annotations
| Gene3D:2.30.30.100 | MapMan:35.2 | GO:GO:0000398 | GO:GO:0000932 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005688 | GO:GO:0005730 | GO:GO:0005732 | GO:GO:0005737 | GO:GO:0006139 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009987 | GO:GO:0030490 | GO:GO:0046540 | UniProt:K4D287 | InterPro:LSM_dom_euk/arc |
| InterPro:LSM_dom_sf | InterPro:Lsm6/sSmF | PFAM:PF01423 | PANTHER:PTHR11021 | PANTHER:PTHR11021:SF1 | SUPFAM:SSF50182 |
| EnsemblPlantsGene:Solyc10g078450.1 | EnsemblPlants:Solyc10g078450.1.1 | UniParc:UPI000276A249 | : | : | : |
Description
No Description!
Coordinates
chr10:+:60278168..60278393
Molecular Weight (calculated)
4925.8 Da
IEP (calculated)
6.676
GRAVY (calculated)
-0.614
Length
44 amino acids
Sequence
(BLAST)
(BLAST)
1: MNIAMEQTEE YVNGQLKNKY GDAFIRGNNV LYISTSKRTL GEGA
1: MSGVGEKASG TTKTPADFLK SIRGKPVVVK LNSGVDYRGI LTCLDGYMNI AMEQTEEYVN GQLKNTYGDA FVRGNNVLYI STTKGTLSDG A
Arabidopsis Description
LSM6BSm-like protein LSM36B [Source:UniProtKB/Swiss-Prot;Acc:O22823]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.