Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 1
- golgi 1
- extracellular 1
- nucleus 3
- cytosol 2
- mitochondrion 1
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400021589 | Potato | nucleus | 87.91 | 87.91 |
| VIT_05s0094g00940.t01 | Wine grape | cytosol, nucleus, plastid | 86.81 | 86.81 |
| KRH40501 | Soybean | nucleus | 85.71 | 85.71 |
| KRH00694 | Soybean | cytosol | 85.71 | 85.71 |
| AT3G59810.2 | Thale cress | cytosol | 82.42 | 82.42 |
| Solyc10g078450.1.1 | Tomato | cytosol | 36.26 | 75.0 |
| Zm00001d025239_P001 | Maize | nucleus | 78.02 | 74.74 |
| KXG30274 | Sorghum | plastid | 78.02 | 73.2 |
| EES12036 | Sorghum | plastid | 76.92 | 72.16 |
| Os02t0510100-01 | Rice | cytosol, nucleus, plastid | 79.12 | 71.29 |
| GSMUA_Achr6P11930_001 | Banana | cytosol | 75.82 | 71.13 |
| TraesCS2A01G284300.1 | Wheat | nucleus | 76.92 | 70.71 |
| TraesCS2B01G301300.1 | Wheat | plastid | 76.92 | 70.71 |
| TraesCS2D01G283200.1 | Wheat | plastid | 76.92 | 70.71 |
| Os04t0388900-01 | Rice | nucleus | 74.73 | 70.1 |
| GSMUA_Achr8P16430_001 | Banana | plastid | 73.63 | 51.94 |
| HORVU2Hr1G070000.3 | Barley | plastid | 76.92 | 50.72 |
| AT4G30220.2 | Thale cress | cytosol | 35.16 | 33.33 |
| AT2G14285.1 | Thale cress | cytosol, extracellular, nucleus | 21.98 | 32.79 |
Protein Annotations
| MapMan:16.4.3.6 | Gene3D:2.30.30.100 | EntrezGene:818985 | UniProt:A0A178VRX5 | ProteinID:AAB64025.1 | ProteinID:AEC10329.1 |
| ProteinID:AEC10330.1 | EMBL:AK227857 | EMBL:AK317095 | EMBL:AK317739 | ProteinID:ANM62773.1 | ArrayExpress:AT2G43810 |
| EnsemblPlantsGene:AT2G43810 | RefSeq:AT2G43810 | TAIR:AT2G43810 | RefSeq:AT2G43810-TAIR-G | EnsemblPlants:AT2G43810.1 | TAIR:AT2G43810.1 |
| Unigene:At.36842 | EMBL:BT008305 | GO:GO:0000398 | GO:GO:0000932 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005681 | GO:GO:0005688 | GO:GO:0005730 | GO:GO:0005732 | GO:GO:0005737 | GO:GO:0006139 |
| GO:GO:0006397 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008380 | GO:GO:0009987 | GO:GO:0030490 |
| GO:GO:0030529 | GO:GO:0046540 | InterPro:LSM_dom_euk/arc | InterPro:LSM_dom_sf | InterPro:Lsm6/sSmF | RefSeq:NP_001078052.1 |
| RefSeq:NP_001318419.1 | RefSeq:NP_181909.1 | UniProt:O22823 | ProteinID:OAP09210.1 | PFAM:PF01423 | PIRSF:PIRSF006609 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025281 | PANTHER:PTHR11021 | PANTHER:PTHR11021:SF1 | SMART:SM00651 | SUPFAM:SSF50182 | UniParc:UPI00000A41D5 |
Description
LSM6BSm-like protein LSM36B [Source:UniProtKB/Swiss-Prot;Acc:O22823]
Coordinates
chr2:+:18149311..18151295
Molecular Weight (calculated)
9728.6 Da
IEP (calculated)
8.432
GRAVY (calculated)
-0.274
Length
91 amino acids
Sequence
(BLAST)
(BLAST)
1: MSGVGEKASG TTKTPADFLK SIRGKPVVVK LNSGVDYRGI LTCLDGYMNI AMEQTEEYVN GQLKNTYGDA FVRGNNVLYI STTKGTLSDG A
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.